Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14h01f
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 174 1e-44
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 59 6e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 40 3e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.084
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.2
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 4.2
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 5.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.5
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 25 7.3
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 7.3
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 7.3
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc... 25 9.7
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 9.7
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 9.7
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 25 9.7
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 174 bits (423), Expect = 1e-44
Identities = 88/121 (72%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
Frame = +1
Query: 298 DNLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIP 474
D+LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IP
Sbjct: 73 DSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIP 132
Query: 475 VGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 654
VG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIKVVDLLAP
Sbjct: 133 VGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAP 192
Query: 655 Y 657
Y
Sbjct: 193 Y 193
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 58.8 bits (136), Expect = 6e-10
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +1
Query: 364 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 540
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 541 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 654
I T + + +AP + + E + TG+K +D + P
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVP 186
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 39.9 bits (89), Expect = 3e-04
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +1
Query: 355 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 531
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 532 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 642
+ + I+ +E++ TGI +D
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSID 155
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.084
Identities = 24/90 (26%), Positives = 38/90 (42%)
Frame = -1
Query: 629 IPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPE 450
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 449 SSTGCPRTKPSVPSMAMVRTVFSPKCCATS 360
+ST C T S+P T +P TS
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTS 309
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 539 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 405
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 90 LVERQQSRIELVTKITNSLRNDPSSAD 10
LVER SR+E+V + +SL N + AD
Sbjct: 889 LVERANSRVEVVHERLSSLENQVTIAD 915
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 325 GHLGSAASCLQTEHPLRHQ*RQLP 254
G GSA SCL H L H +Q P
Sbjct: 140 GFAGSAISCLVWAHQLLHPNKQFP 163
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 415 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 531
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 545 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 402
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.3
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +1
Query: 346 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 525
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 526 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLL 648
+R P K A H + V+ ++ E + G KV + L
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL 100
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 479 PTGIRMGEPESSTGCPRTKPSVPSMAMV 396
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 206 TAAPVTSDAFSVALFTTVFVAKRPTLQT 123
T + VTS+A S A V +K+P L+T
Sbjct: 521 TESAVTSEALSAARLEAVKASKKPPLRT 548
>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 340 RSPRLVLEVAQHLGENTVRTIAMD 411
R+P LVL+ A LGEN + D
Sbjct: 362 RNPSLVLDSANQLGENVAWPVQYD 385
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 567 DSSSLVGWDGTALVNRFADYIDDASEGFSSHRDTNG*ARVEYGLPTD*AFSTVHGNG 397
D +LVG D L++ + E + + DT+ A++ G ++ S HG G
Sbjct: 115 DLLNLVGLDHIDLISDIVANSSNLIEEYMNQNDTSIAAQLSDGYTSEAGSSATHGQG 171
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +2
Query: 20 DGSLRKEFVIFVTSS-ILLCC 79
DG+LR E V+ ++ S ILLCC
Sbjct: 631 DGTLRTEEVVELSESLILLCC 651
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 9.7
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = -1
Query: 638 TTFIPVTRISCC-TDMSTNSGASAWIAAVLSVGMGP-RSSIGSPITLMMRPRVSAPTGIR 465
++FI + + + TD++ G S +L+ + R +I P L+ V++PT
Sbjct: 344 SSFIAIVKPNLTFTDIANRLGISVSECFILAKHLIHWRKAIAIPPLLIRNTYVTSPTANL 403
Query: 464 MGEPESSTGCPRTKPSVPSMAMVRTVFSPK 375
E S + PS+PS++ + S K
Sbjct: 404 FNLEEESKLFKKEFPSLPSLSTFLAILSFK 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,383
Number of Sequences: 5004
Number of extensions: 58664
Number of successful extensions: 162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -