Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14g16r
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.4  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 199 HRHQEHATGQYSHEC**CCLLWVPGHRIL 285
           HRH    TG+  H+C  C   ++   +++
Sbjct: 164 HRHMRIHTGERPHKCTVCSKTFIQSGQLV 192


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 172 SARFLLNLYHRHQEHATGQYSH 237
           +A FL   YH HQ H +  + H
Sbjct: 308 TAGFLPPSYHPHQHHPSQYHPH 329


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 377 EPNERIKYSARSRSCLIIS 433
           EP+ ++ YS   R C+ IS
Sbjct: 93  EPDSKVTYSGLWRVCVAIS 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,748
Number of Sequences: 438
Number of extensions: 4885
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)