Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14g16f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    27   2.1  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    26   4.9  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    26   4.9  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.9  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    26   4.9  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.6  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    25   8.6  

>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 331 QPSFNNSPFTSHKDENWI----SVST-KEFLVVHKTHLKSFRILRIKMIDWHSD 185
           Q  F   P  SHK +NW+    S+S+ K+   +H   LKS  +      DW+ D
Sbjct: 53  QKKFKEKPKVSHKAKNWVRQPFSISSRKDDFTLHHWVLKS-EVDSEAYEDWNKD 105


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 535 NLTVCESRLFFHFIYKVSKIGK 470
           ++T  ES LF H++Y + ++GK
Sbjct: 415 SITTEESFLFLHYVYIIEEMGK 436


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 380 IYTEHRYYGQTLPYRDFTTENLQY 451
           I TE R+  Q+LP++  T EN+Q+
Sbjct: 55  IGTERRWNLQSLPWQHVTVENVQH 78


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 73  ETSQYK*DNHHFINMYHTKCE 11
           +TS+Y+  + +F N+Y+T CE
Sbjct: 212 KTSEYRYVDFNFTNVYNTSCE 232


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 172 NISCRTSLSFLRWLEVYP 119
           NIS + SLS+  WL  YP
Sbjct: 443 NISLQKSLSYSTWLNTYP 460


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = -1

Query: 451  VLQVFCCKISIRQRLPVIPMFSVYLISTVFPGHFEHVTRAQPSFNNSPFTSHKDENWISV 272
            +L V C    +   L ++P+F +YL +  +        +   +   SP  +H  E+   +
Sbjct: 1035 ILGVICYSAPLSLLL-IVPLFFLYLYNRAYYVRTSRELKRLDNVTRSPLYAHVQESLSGL 1093

Query: 271  ST 266
            ST
Sbjct: 1094 ST 1095


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 291 SLWEVNGLLLKDGCARVTCSKWPGKTVDIR 380
           S+ E++  L+KDG  R   + WPG+ + ++
Sbjct: 2   SVQELSHPLIKDGWFREINNMWPGQAMTLK 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,907
Number of Sequences: 5004
Number of extensions: 60616
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)