Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14g16f
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   7.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.4  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 145 FLRWLEVYPYWGFHTPRF 92
           F +WL+V   W  H+P +
Sbjct: 651 FPKWLQVLALWLNHSPNY 668


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 479 LAYFINEMKKQPRFADSKVILYG 547
           L+YF+   K QP+++ S++ + G
Sbjct: 428 LSYFLRYKKLQPQYSQSELQMPG 450


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 479 LAYFINEMKKQPRFADSKVILYG 547
           L+YF+   K QP+++ S++ + G
Sbjct: 428 LSYFLRYKKLQPQYSQSELQMPG 450


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 359 RENRGYQIYTEHRYYGQT 412
           RE + Y+   E+R YG+T
Sbjct: 278 REQKSYKNEREYRKYGET 295


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 166 KCSAELGHYASRSF*SSKYGNFSNAFYVQRGILWWKRISN 285
           +CS  L H     F  S+YG+  N   ++ G +  +R++N
Sbjct: 445 RCS-NLNHMMREEFYQSQYGDPINNCEIKAGEIDAERLNN 483


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 359 RENRGYQIYTEHRYYGQT 412
           RE + Y+   E+R YG+T
Sbjct: 267 REQKSYKNEREYRKYGKT 284


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -1

Query: 412 RLPVIPMFSVYLI 374
           R+P++PM  VY +
Sbjct: 784 RIPILPMIPVYCV 796


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -2

Query: 111 GSTPRGSAHIKQKKL-PNTSKI 49
           G+T R S HIK  KL  N +K+
Sbjct: 275 GTTVRASVHIKLPKLAANRAKL 296


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 35  NKVMIILLVLGSFFC 79
           NK+ +IL   G FFC
Sbjct: 123 NKMTVILTPPGRFFC 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,557
Number of Sequences: 438
Number of extensions: 4287
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)