Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14g10f
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   3.1  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    25   7.2  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    25   9.5  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   9.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.5  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 141 SKRIGLXLPHSDCCLQGSW 85
           S  +   LPHSD  L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 237 WLFTRRNQNNHQVITNGNXNS--IRNSNYNGNLPLFVIXHGWNSNGNSAVNTMIRPALLA 410
           W+FT  ++N  QV  NG   S     +N   + PL    +G  S+G+     + +  LL 
Sbjct: 425 WVFTSDDRNLAQVWVNGRLVSGFEMKANLKNSTPL---TNGVTSSGHQVFKELTQAHLLP 481

Query: 411 VSDC 422
            + C
Sbjct: 482 RTQC 485


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 255 NQNNHQVITNGNXNSIRNSNYNGNLPLFVIXHGWNSNGNS 374
           N NN+   T G+ N+  N   + N   +   + + SNG+S
Sbjct: 49  NDNNNSNSTYGSSNNYGNYGSSNNYGSYGASNTYGSNGSS 88


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 208 CQGTVQTTNTGFSPDVTKTTI 270
           C+ T +  N GF+PD+ K  +
Sbjct: 374 CRVTTEDPNNGFAPDIGKIEV 394


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 205 LCQGTVQTTNTGFSPDVT 258
           LC  +VQ+ +T   PD+T
Sbjct: 248 LCSNSVQSAHTNLQPDIT 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,523
Number of Sequences: 5004
Number of extensions: 43965
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)