Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14g01f
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p... 28 1.4
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 26 5.5
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|... 26 5.5
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 7.3
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 25 7.3
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 7.3
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 7.3
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 9.6
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 9.6
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 25 9.6
>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 264
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 491 SLICAPFLFVFFFSQLNHVNVTYIFKNGSFEFACPSFSLFFFLIQWYIF 345
S++C L +F Q N V++ + + C S +L F L+++Y F
Sbjct: 116 SIVCIFDLVIFGCLQYNMVSMDDLHVMQRLSWFCASLALLFILMRYYDF 164
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 494 NHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAPSERTLSEYTTMDERTR 646
++Y R DS SS L R S +E+ S R SE +Y DER R
Sbjct: 209 DNYNENRRRHYDSYSSYDELERRRSSNESYSRR--SELPRRDYNRHDERER 257
>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/58 (20%), Positives = 30/58 (51%)
Frame = -2
Query: 489 FNLCAIFVCLFFFSIKSRQCDVHFQKWVVRICLSVIFSFFFSNSMVYFFI*PTSVKMF 316
F + + +C F +S+ + D+H Q ++ + +S++ F ++ + + SV +F
Sbjct: 284 FPIPIVLLCFFLYSLLTPFFDIHLQFQLIVMHMSIVQVGFINSVKTFGSLLTCSVCLF 341
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 518 SGVDSPSSGGYLHRASSRDENDSHRAPS 601
SG + S + HR+SSRD S+R+ S
Sbjct: 60 SGRSASRSSNFSHRSSSRDSFSSNRSYS 87
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 90 NYCLSAVLVH*VVQLIIKW 146
N LSAV++H V LII W
Sbjct: 486 NAVLSAVIIHSVFDLIIPW 504
>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 479 HKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAPSERTL 613
HK K+N + R S S G H + S +PSE +L
Sbjct: 362 HKAKSNSLFSMKRPSSSSSSLSGSWHGDTENSVKQSLASPSEASL 406
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 530 SPSSGGYLHRASSRDENDSHRAPSERTLSEYTTMDERTRSP 652
SPS R+ DE R+ S R S + D R+RSP
Sbjct: 117 SPSPHEARSRSPYNDERSDRRSMSPRYRSRSRSPDGRSRSP 157
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 164 SFRCLQCSSCQNKRINLRLHRNFCSNCSDLFESILTH*EKSKYEPKLSRNWN 319
S++ + ++ Q K I + +C NC + F++ +H S++ N N
Sbjct: 477 SYKAMLHNTSQRK-IRVDAKPGYCENCREKFDNFESHIRSSRHRRFAENNDN 527
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -2
Query: 654 DGDRVLSSIVVYSDSVLSEGALWLSFSSLDDALCKYPPDDGESTPERCVAT*WLFFNLCA 475
DGD ++ I V + L E LW++ + D+ K + ++ C+ + W + +C
Sbjct: 752 DGDLRITDISVVKATHLGERVLWIN-TVQSDSTIKAFTYNVDTKQLNCIKS-WKYKTVCL 809
Query: 474 IF 469
+F
Sbjct: 810 VF 811
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = +2
Query: 425 TSH*RDLIEKKKRQTKMAHKLKNNHYVATHRSG 523
T + L + + Q H NNH+ TH G
Sbjct: 140 TQQQQSLPQTNEHQRARTHSNANNHFTKTHHQG 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,717
Number of Sequences: 5004
Number of extensions: 55841
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -