Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14g01f
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0163 - 32105234-32105977                                         33   0.26 
03_06_0170 - 32128619-32129647                                         31   0.61 
03_02_0700 - 10517754-10519100                                         31   1.1  
08_02_0066 - 11852258-11852461,11852542-11852957,11853778-11854333     30   1.4  
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71...    29   4.3  
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371     28   5.7  

>03_06_0163 - 32105234-32105977
          Length = 247

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = -2

Query: 135 STEQLNVLALHLNNNSCIFRLFIYYVDVISRQWRRAH 25
           S ++L ++ L L+++  I+ + ++ +D +S QWRRA+
Sbjct: 205 SEDELYMICLRLDHDFAIYDMTVHRMDFLSLQWRRAY 241


>03_06_0170 - 32128619-32129647
          Length = 342

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -2

Query: 135 STEQLNVLALHLNNNSCIFRLFIYYVDVISRQWRRA 28
           S ++L ++ L ++    I+ + ++ +D +SRQWRRA
Sbjct: 209 SEDELYMVCLRIDYEFTIYDMTVHKMDFLSRQWRRA 244


>03_02_0700 - 10517754-10519100
          Length = 448

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = +2

Query: 437 RDLIEKKKRQTKMAHKLKNNHYVATHRSGVDSPSSGGYLHRASSRDENDSHRAPSERTLS 616
           +DLIE + R     H+    H+ A  R G  S SSG    RA+ RD+      P  RTL 
Sbjct: 51  QDLIELRHRFISHPHRALAEHHDALSRGGGSSSSSG----RAAQRDDEPD---PPPRTLR 103

Query: 617 E 619
           +
Sbjct: 104 D 104


>08_02_0066 - 11852258-11852461,11852542-11852957,11853778-11854333
          Length = 391

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 645 RVLSSIVVYSDSVLSEGALWLSFSSLDDALCKYPPDDGESTP 520
           R+L+S+    D  + +G L+  F S    LC+   DDG S P
Sbjct: 346 RLLASVKEIDDIKVEKGRLYAQFISALKKLCRKKMDDGGSAP 387


>12_01_0089 -
           707260-707317,707626-708050,708663-709621,710223-710408,
           710502-710604,710701-710883,710932-711012,711072-711164,
           711650-711832,713751-713966
          Length = 828

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 455 KKRQTKMAHKLKNNHYVATHRSGVD-SPSSGGYLHRASSRDENDSHRAPSERTLSEYTTM 631
           + R++   H  +NN Y     +G+  +P   GYL   +    +DSHRA    T      +
Sbjct: 612 QNRRSSNGHS-RNNVYGYAGTNGIGPAPCPPGYLIMRTYSQIDDSHRARGTGTYFPNPNL 670

Query: 632 DERTRSPSG 658
             + RSPSG
Sbjct: 671 -SKDRSPSG 678


>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
          Length = 437

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 558 EHRLEMKTTATEHLRRGRCQSTRQWTKEPDRRL 656
           EH   M  T    + RGR ++ R+WT + D  L
Sbjct: 20  EHASRMSQTQCSKVVRGRGRNKRKWTADEDEEL 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,468,784
Number of Sequences: 37544
Number of extensions: 324701
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)