Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f22f
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 87 2e-18
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 33 0.039
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.16
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 29 0.64
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.0
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 27 2.6
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.4
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 3.4
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 6.0
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 25 6.0
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 25 6.0
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 7.9
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces... 25 7.9
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 86.6 bits (205), Expect = 2e-18
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Frame = +1
Query: 220 VSELGELGLVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGI--PMLEIP 393
+S LGEL + F+DLNPDV AFQR FV E+RR + ER LRYL EI +GI P +P
Sbjct: 1 MSALGELSTIHFKDLNPDVVAFQRSFVREIRRLTDTERLLRYLHSEIDLNGIHVPDHNLP 60
Query: 394 GECPEAPQPREMIDLEATFEKLENELREVNQNAEALKRNYLELTELKHILRKTQVFFDE 570
+ + D+ +LE +R++ ++++ L+ YL+ E ++L K FF +
Sbjct: 61 PSYESVLESSTIEDIIERITRLEARVRQLVESSQLLEARYLQQLEFANVLTKADAFFSK 119
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 32.7 bits (71), Expect = 0.039
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 286 QRKFVNE-VRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDL-EATFEKL 459
+RK VN+ V+ E+ R L+ KE+ + I M EIP + Q ++ D+ A +L
Sbjct: 142 KRKLVNDAVKHFIELNR-LKTYRKELYDEVISMNEIPSQASTTHQKLQVCDICSAYLSRL 200
Query: 460 ENELREVNQNAEALKRNYLELTELKHILR 546
+N+ R + + + Y L + LR
Sbjct: 201 DNDRRLADHFSGKMHLGYAMLRNIARDLR 229
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.7 bits (66), Expect = 0.16
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Frame = +1
Query: 307 VRRCDEMERKLRYLE--KEIRRDGIPML------EIPGECPEAPQP-REMIDLEATFEKL 459
++RC E+E K+ LE + I ++ I L E + PE +P + I + + K
Sbjct: 157 IQRCSELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSALSKK 216
Query: 460 ENELREVNQNAEALKRNYLELTE 528
+ + NQ ++ K+N TE
Sbjct: 217 KKKRNRKNQKKKSTKQNIEATTE 239
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 28.7 bits (61), Expect = 0.64
Identities = 18/100 (18%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = +1
Query: 277 NAFQRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEK 456
+A K + +R+C++ R ++E+ R + + E + + EM+ L + +
Sbjct: 8 DAVYNKVADILRQCEDFHRLSTHIERFEREQASLNMHVKTELEKHVEAVEMLTLCESARE 67
Query: 457 LENELREVNQNAEALKRNYLE---LTELKHILRKTQVFFD 567
+ +E +++ + K Y +++L +++++T V D
Sbjct: 68 MVDEFPLISRMSRIYKNCYATKQMISQLNNLVKETDVIED 107
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.0
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +1
Query: 208 AYACVSELGELGLVQFRDLNPDVNAFQRK-------FVNEVRRCDEM----ERKLRYLEK 354
A +S + + + FR+L+ + F+RK F E+R+ D + ++L LE+
Sbjct: 934 ALTTISSMNQAVNMNFRELDKSIQEFKRKCQSMEREFKTELRKLDGVLEARSKRLSQLEE 993
Query: 355 EIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKL---ENELREVNQNAEALKRN 510
++ G P +P+ + + L++ +KL + V + ALKR+
Sbjct: 994 RVKLLGAGS---TSSIPNSPRASKRVSLDSEDKKLVPASPDKSAVQRGITALKRD 1045
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 412 PQPREMIDLEATFEKLENELREVNQNAEALKRN-YLELTELKHILRKTQV 558
P PR +LEATFE N + +V + R+ ++E+T L T++
Sbjct: 469 PMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKI 518
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 26.2 bits (55), Expect = 3.4
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +1
Query: 298 VNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMID-LEATFEKLENELR 474
VN +R + E+K+ ++E R +LE E Q + I+ LEA E+ +E
Sbjct: 127 VNRKQRAAKEEQKI---QEEFERQITDLLE------EQQQLKLEIERLEAETERANSETE 177
Query: 475 EVNQNAEALKRNYLELTE--LKH 537
+ + EAL+ Y EL LKH
Sbjct: 178 QYEKQKEALEEEYEELRNECLKH 200
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 3.4
Identities = 24/75 (32%), Positives = 33/75 (44%)
Frame = +1
Query: 319 DEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNAEA 498
D +ERKLR L EIR + E EA + R + E++E E R + + E
Sbjct: 417 DNLERKLRQLRVEIR-------ALEREKDEASKER-LKAARKEAEQVEEETRPIREKYEL 468
Query: 499 LKRNYLELTELKHIL 543
K EL + K L
Sbjct: 469 EKSRGSELQDAKRRL 483
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 415 QPREMIDLEATFEKLENELREVNQNAEALKRN 510
Q RE+I+ E KLE+E + N E LK++
Sbjct: 740 QERELIESEKHRMKLESENLHLQANIELLKKD 771
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.4 bits (53), Expect = 6.0
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 313 RCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLENELREVNQNA 492
R + +R ++ + +E D +LE+P PE +++ E ++EN R NQ+
Sbjct: 161 RMTKRQRAIQGILEEGEED--ELLELP---PETSGRKKLTPEEMALRRIENARRRKNQSE 215
Query: 493 EALKRNYLE 519
L+ +E
Sbjct: 216 RRLEEEKME 224
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 211 YACVSELGELGLVQFRDLN 267
YACV+ + LG++ FRD N
Sbjct: 171 YACVAMIAGLGVLGFRDPN 189
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 7.9
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +1
Query: 286 QRKFVNEVRRCDEMERKLRYLEKEIRRDGIPMLEIPGECPEAPQPREMIDLEATFEKLEN 465
Q K +NE R + +++ +LE+ RR+ IP+ E +A Q E D E +E+ E
Sbjct: 667 QNKSMNE--RLRVIGKRIDHLERAYRREAIPLWE-----EDAKQQAEH-DREIFYER-EK 717
Query: 466 ELREVNQ 486
+ +EV +
Sbjct: 718 QRKEVQE 724
>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 331 RKLRYLEKEI-RRDGIPMLEIPGECP-EAPQPRE 426
RK R +E ++DG+P +E+ ECP E + R+
Sbjct: 109 RKDRDQAREFHKKDGLPFIEVYVECPVEVAEQRD 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,997
Number of Sequences: 5004
Number of extensions: 34998
Number of successful extensions: 116
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -