Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14f15r
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    29   0.059
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    29   0.059
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       27   0.14 
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           26   0.42 
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           26   0.42 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 28.7 bits (61), Expect = 0.059
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = -1

Query: 499 LCCELSLVLETQTHCNITCSSQCTTIGSASTTVRTPLVMLYKATGRICLSFSTSCIKTLR 320
           L C L+  L   T   +TC  Q   +G + + V   L+       RI  S S + ++  R
Sbjct: 562 LVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALLTKTNRIARIFDSASRTAVRP-R 620

Query: 319 LFAPATEVKLVSSQLLMQ 266
             +PA++V + ++ + +Q
Sbjct: 621 YISPASQVCIAAALIALQ 638



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 131 GNAEATDIYNFLLARSSSTTVT 66
           GNA  T I    +A S S TVT
Sbjct: 730 GNAHETQITTLCVAISLSATVT 751


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 28.7 bits (61), Expect = 0.059
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = -1

Query: 499 LCCELSLVLETQTHCNITCSSQCTTIGSASTTVRTPLVMLYKATGRICLSFSTSCIKTLR 320
           L C L+  L   T   +TC  Q   +G + + V   L+       RI  S S + ++  R
Sbjct: 652 LVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGALLTKTNRIARIFDSASRTAVRP-R 710

Query: 319 LFAPATEVKLVSSQLLMQ 266
             +PA++V + ++ + +Q
Sbjct: 711 YISPASQVCIAAALIALQ 728



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 131 GNAEATDIYNFLLARSSSTTVT 66
           GNA  T I    +A S S TVT
Sbjct: 820 GNAHETQITTLCVAISLSATVT 841


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 502 SLCCEL--SLVLETQTHCNITCSSQCTTIGSAST 407
           S+ C L  ++V   +TH N+T  SQC T  +  T
Sbjct: 164 SVVCSLPQTIVFHLETHPNVTWYSQCVTFNAFPT 197



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 659 LQKWRQFRNNPTNLVPVNSR 600
           L+ WR   +N T L+P++ R
Sbjct: 13  LENWRVNNSNYTELLPIDMR 32


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 641 FRNNPTNLVPVNSRRYVYCVGVRQGNSSDYNFLFE 537
           F + P N +P N R   +C GV    ++  +FL +
Sbjct: 68  FMDTPLNELPANKRFQAHCAGVITALNNVIDFLHD 102


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 641 FRNNPTNLVPVNSRRYVYCVGVRQGNSSDYNFLFE 537
           F + P N +P N R   +C GV    ++  +FL +
Sbjct: 68  FMDTPLNELPANKRFQAHCAGVITALNNVIDFLHD 102


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 270 INSCDETSFTSVAGANSRKVLIQEVENDRQ 359
           I+ CD  ++TS+  A    +   ++ N+R+
Sbjct: 574 IDVCDNQTYTSLQMAMKNPIEFTDLSNERK 603


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/51 (23%), Positives = 21/51 (41%)
 Frame = -1

Query: 517 TQPTWSLCCELSLVLETQTHCNITCSSQCTTIGSASTTVRTPLVMLYKATG 365
           TQP  S   E     E   + +   + Q   + + +TT+ TP   +   +G
Sbjct: 801 TQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTTINTPTTSVISMSG 851


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 724 STECRS*TSPATSGIPAASAT 662
           ST     T+ AT+ +PAASAT
Sbjct: 214 STPATVTTTGATTTLPAASAT 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,091
Number of Sequences: 438
Number of extensions: 4863
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)