Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f15f
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 42 6e-04
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 32 0.34
11_01_0752 - 6327269-6327764,6328571-6328839 31 0.80
08_02_1364 - 26415278-26415319,26415399-26415518,26415739-264158... 30 1.8
10_07_0120 + 13076748-13076955,13077060-13077370 29 3.2
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513... 29 3.2
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 29 4.2
03_05_0220 + 22063411-22063468,22063535-22063545,22064478-220646... 29 4.2
01_06_1777 + 39818212-39819696 29 4.2
10_08_1047 - 22549376-22551271 28 7.4
>08_02_0585 + 19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 41.5 bits (93), Expect = 6e-04
Identities = 36/172 (20%), Positives = 78/172 (45%), Gaps = 5/172 (2%)
Frame = +3
Query: 6 NERDYYVWAGAITQLEWIRR-RLEHLPQAHEAFTAYTLDLLRNVINHLGYNERATDSTST 182
NE DY V + + I + ++ P+ ++LL + LG++ + +S
Sbjct: 537 NESDYTVLSHVTSVCLGIDKISVDATPELSRDIKQLLINLLLSAAKTLGWDPKEGESHLD 596
Query: 183 ILNRMQILNLACNLGHSGCISDSLQKWRQF-RNNPTNLVPVNSRRYVYCVGVRQGNSSD- 356
++ R +L LGH I++ ++++ F ++ TN++P ++R+ Y +R +S
Sbjct: 597 VMLRSLLLIALVKLGHDETINEGVRRFHIFIKDRKTNILPPDTRKASYLAVMRTVTTSSR 656
Query: 357 --YNFLFERYNASQNTADMVVMLRALACTRDTNSLQHYMFQSMHNDRIRIHD 506
Y+ L + Y + + +L +L+ D + + + M D +R D
Sbjct: 657 AGYDALLKIYRETAEAQEKSRILGSLSSCLDKDIVLEAL-NFMLTDEVRNQD 707
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 32.3 bits (70), Expect = 0.34
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Frame = +3
Query: 111 TLDLLRNVINHLGYNERATDSTSTILNRMQILNLACNLGHSGCISDSLQKWRQFRNNPTN 290
TL L +++ LG++ + ++S + R +L LGH IS+ +++++ F ++
Sbjct: 635 TLSSLLHLLK-LGWDPKNSESHLDAMLRPVLLVGLVQLGHDKTISEGVRRFQIFFDDRNT 693
Query: 291 LVPVNSRRYVYCV---GVRQGNSSDYNFLFERYNAS 389
+P ++R+ Y V N S Y+ L + Y S
Sbjct: 694 SLPPDTRKAAYLSVMHNVSSTNRSGYDALLKIYRES 729
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 160 AQPTPHQPFSTECRS*TSPATSGIPAASATVF 255
++PT + + CR SP+TSG PAAS+ F
Sbjct: 47 SKPTEGESTTRRCRPTQSPSTSGAPAASSPSF 78
>08_02_1364 -
26415278-26415319,26415399-26415518,26415739-26415825,
26416273-26416443,26416535-26416738
Length = 207
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 103 QLTLWIFLET*SITW--DTTNAQPTPHQPFSTECRS*TSPATSGIPAASATVFRNG 264
Q L + L+ W D Q + +P +TEC S + T+ PAA AT +NG
Sbjct: 103 QRLLTLLLQKFQPEWQEDVAKDQASASRPETTECPSNQNQDTTEQPAAGATEIQNG 158
>10_07_0120 + 13076748-13076955,13077060-13077370
Length = 172
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 541 TGRICLSFSTSCIKTLRLFAPATEVKLVSSQL 636
TG CLS +TS +TL LFA KLV QL
Sbjct: 17 TGTACLSAATSSPRTLELFA-ILRCKLVCGQL 47
>03_06_0125 + 31850858-31850905,31851032-31851109,31851221-31851337,
31851346-31851642,31852498-31852509,31852737-31852822,
31853516-31853660,31853767-31853862,31854333-31854424,
31854696-31854797,31854891-31855037,31855116-31855266,
31855418-31855480,31855570-31855806,31856081-31856185,
31856263-31856376,31856459-31857037,31857279-31857286,
31857858-31858004,31858077-31858203
Length = 916
Score = 29.1 bits (62), Expect = 3.2
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Frame = +1
Query: 136 SITWDTTNAQPTPHQPFSTECRS*TSPATSGIPAASATVFRNGDSLGTIRPIWSQ*ILGA 315
S+ + +T +P FS S +P + P + + RNGDSL I+ W+
Sbjct: 777 SMPYFSTPGKPKEMYNFSPGTESERTPCSKEYPTSYS---RNGDSLVQIKDSWTHGRWAQ 833
Query: 316 TCTVL-VFVKATPVXXXXXXXXXMLPRTQPTWS---LCCELSLVLE 441
C V + V A + +L T T+S C+LSLV E
Sbjct: 834 ACVVHGLLVVAGRISISSGSFNNLLGVTHLTYSGDHHSCQLSLVDE 879
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 28.7 bits (61), Expect = 4.2
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Frame = +3
Query: 114 LDLLRNVINHLGYNERATDSTSTILNRMQILNLACNLGHSGCISDSLQKWR-QFRNNPTN 290
+ LL LG++ + +S + R +L LGH I++ ++++ F + T+
Sbjct: 622 IKLLLPPAKKLGWDPKDGESHLNAMLRPMLLVALVQLGHDKTINEGFRRFQIFFDDRNTS 681
Query: 291 LVPVNSRRYVYCV---GVRQGNSSDYNFLFERYNAS 389
L+ ++R+ Y V N S Y+ L + Y S
Sbjct: 682 LLTPDTRKAAYLSVMHNVSSTNRSGYDALLKVYRKS 717
>03_05_0220 +
22063411-22063468,22063535-22063545,22064478-22064609,
22064696-22065799,22065874-22066566,22066968-22067019,
22067861-22067916,22067917-22068063
Length = 750
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 215 GEVQDLHSVENG*CGVGC-AFVVSQVIDHVSKKIQSVSCESFMRLRQMFQSPANPFELRD 39
G + D + V V C + VS HVS + +SC+++ L + + +E+ D
Sbjct: 681 GNIYDSYHVSGDTREVSCDTYQVSDDFYHVSGDTREISCDTYQVLDDFYHVSGDTYEISD 740
>01_06_1777 + 39818212-39819696
Length = 494
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 245 ADAAGMPEVAGEVQDLHSVENG*CGVGCAFVVSQVIDHVSKK 120
AD AG PEV+ +DL S+ G C + QV+D +S +
Sbjct: 139 ADFAGRPEVSLASEDLTSLITGLCRARRPELALQVLDEMSNQ 180
>10_08_1047 - 22549376-22551271
Length = 631
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 372 ERYNASQNTADMVVMLRALACTRDTNSLQHYM 467
+R + NT +MLR L TRDT++L+ ++
Sbjct: 514 KRSGMASNTCTYNIMLRGLCRTRDTHALKWFL 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,772,933
Number of Sequences: 37544
Number of extensions: 374085
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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