Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f13f
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 31 0.100
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 0.27
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa... 30 0.30
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 28 1.2
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 28 1.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.1
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 27 2.1
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 2.1
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 27 2.1
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 2.1
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.8
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 26 3.7
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 26 3.7
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 3.7
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 5.0
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 6.5
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 8.7
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 25 8.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 8.7
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 31.5 bits (68), Expect = 0.100
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +2
Query: 419 SGKPDKPEVKPKENGNDVRNGTETPSNGGQ-DANGTVSDTDDEALVID---DDEP---QD 577
S P + E+ PKE+ N + ++ P+N + + ++ DD+ + D +DEP QD
Sbjct: 2 SSSPTESEILPKESHNSIDEQSQQPANTDTLVKDNSFNEQDDQEVDNDYKSNDEPVQSQD 61
Query: 578 ELFPELAYDDS 610
+ P +A ++S
Sbjct: 62 PISPNMASNES 72
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect(2) = 0.27
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = +2
Query: 161 VTRKGAIGEEKEKRQTDSPAKDVKK-----KTTNAEKDKQTTSEKPEKS 292
++R+ + E K KR + A+ K ++ +AEKDK+ +K E S
Sbjct: 586 LSRRASKHESKHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDS 634
Score = 23.4 bits (48), Expect(2) = 0.27
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 386 QEKKEDSKTEKSGKPDKPE 442
++KKEDSK +S KP+
Sbjct: 628 KDKKEDSKRSRSHSVSKPD 646
>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 29.9 bits (64), Expect = 0.30
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 220 RWAVCLSLFLFFTYGPFTCYFLTHDLPIQVNIFDF 116
R + L+L + FT+ F YF+ HD ++++FDF
Sbjct: 13 RKLIMLALAIVFTFFAFGLYFIPHD---EISVFDF 44
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +2
Query: 392 KKEDSKTEKSGKPDKPEVKPKENGNDVRNGTETPSNGGQDANGTVSDTDD 541
K ++ + G P P + GN+V + + SN + NG D+ +
Sbjct: 464 KNISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNGETDDSGE 513
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +2
Query: 170 KGAIGEEKEKRQTDSPAKDVKKKTTNAEKDKQTTSEKPEK 289
KGA E++EK++T P ++VK + E+ + +++PE+
Sbjct: 83 KGA-DEKEEKKETIQPPEEVKTEPPQPEEKEGKEAKEPEE 121
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/67 (17%), Positives = 28/67 (41%)
Frame = +2
Query: 380 SPQEKKEDSKTEKSGKPDKPEVKPKENGNDVRNGTETPSNGGQDANGTVSDTDDEALVID 559
SP++ K+++K S +P K VK ++ + + + S ++ E+ +
Sbjct: 50 SPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSE 109
Query: 560 DDEPQDE 580
+ E
Sbjct: 110 SESSSSE 116
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +2
Query: 407 KTEKSGKPDKPEVKPKENGNDVRNGTETPSNG---GQDANGTVSDT 535
K+E++ +K E + KENGND ++ +G G++ +V +T
Sbjct: 413 KSEETSNGNKSEQEEKENGNDETRSNDSLVSGKGKGEENEDSVFET 458
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +2
Query: 389 EKKEDSKTEKSGKPDKPEVKPKENGNDVRNGTETPSNGG--QDANGTVSDTDDEALVIDD 562
++ +DS K+GK + ++ G DV+ ET + +++ T S ++ +++DD
Sbjct: 1101 QELDDSSKGKAGKMPASKKNKRQKG-DVKKIDETKNEATDMEESLTTPSGKVNKEVIVDD 1159
Query: 563 DEPQDE-LFPELAYD 604
+DE + P+ A D
Sbjct: 1160 TSLRDEAIVPDKAID 1174
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 173 GAIGEEKEKRQTDSPAKDVKKKTTNAEKDKQTTSEK 280
G I EE+EK+ KD+ K+ AEK K+ +
Sbjct: 597 GEINEEEEKKIYKKLKKDLSKRLERAEKLKEADKSR 632
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/67 (23%), Positives = 29/67 (43%)
Frame = +2
Query: 380 SPQEKKEDSKTEKSGKPDKPEVKPKENGNDVRNGTETPSNGGQDANGTVSDTDDEALVID 559
S E D+ K ++ EV N ND + + ++A+ + +DE +
Sbjct: 64 SHNESPNDTTINKGEDGNENEVD-NVNNNDKKEDEDNVEENEEEADANEEEEEDEEDDEE 122
Query: 560 DDEPQDE 580
D+E +DE
Sbjct: 123 DEEDEDE 129
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +2
Query: 392 KKEDSKTEKSGKPDKPEVKPKENGNDVRNGTETPSNGGQ----DANGTVSDTDDEALVID 559
K+E + E + + E+ P+ D TE S+ A +SD DE +V +
Sbjct: 88 KEESNLIESNSLDNVQEINPQNTIGDKSAHTEEESSNDNLVKITAGTIISDIMDEPVVDE 147
Query: 560 DDEPQDE 580
DD+ +E
Sbjct: 148 DDKLSEE 154
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 149 MSQKVTRKGAIGEEKEKRQTDSPAKDVKKKTTNAEKDKQTTSEKPEKS 292
+S ++ K A+ E K R+ KDV KK K K+ ++K S
Sbjct: 184 LSIEMAAKNALKEAK--RENAKVPKDVSKKEAKTTKSKEKATKKTSSS 229
>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +2
Query: 380 SPQEKKEDSKTEKSGK--PDKPEVKPK 454
+PQ + E+ KT + + P+KPEVKPK
Sbjct: 13 NPQSQGENLKTFEIYRWNPEKPEVKPK 39
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 74 VLYLNNT*ILRKGVTFTHSSREQC 3
V YL+N LRK +TF +S E+C
Sbjct: 251 VTYLHNNGYLRKCLTFVPNSPERC 274
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 5.0
Identities = 29/167 (17%), Positives = 59/167 (35%)
Frame = +2
Query: 47 EFKYYLNTKQISVINRNCAIKHLKIKYIYLNR*IMSQKVTRKGAIGEEKEKRQTDSPAKD 226
EF YL T+ + KH K K SQK+++KGA E+ S +
Sbjct: 56 EFLPYLTTEDVG--------KHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGS 107
Query: 227 VKKKTTNAEKDKQTTSEKPEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQEKKEDS 406
++ ++ + +++SE + S + E S
Sbjct: 108 SSDESDSSSSESESSSEDNDSS-----SSSSDSESESSSEDSDSSSSSSDSESESSSEGS 162
Query: 407 KTEKSGKPDKPEVKPKENGNDVRNGTETPSNGGQDANGTVSDTDDEA 547
+ S + E ++N + + + +D++ + S +D E+
Sbjct: 163 DSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSES 209
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 407 KTEKSGKPDKPEVKPKENGNDVRNGTETPSNGGQDANGTVSDTDDEALVIDD 562
++E G P KP EN D + T +PS NG + D AL ++D
Sbjct: 16 QSEALGMPRTHGPKPSEN--DPKEPTCSPSPAFYSVNGEMKDYKLMALELED 65
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 185 EEKEKRQTDSPAKDVKKKTTNAEKDKQTTSEKPEKS 292
EEK KR+ + AK ++ E +++ E EK+
Sbjct: 582 EEKAKREAEEKAKREAEENAKREAEEKAKREAEEKA 617
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 167 RKGAIGEEKEKRQTDSPAKDVKKKTTNAEKDKQTTSEKPEK 289
R+ + E+ KRQ ++ K T +E +KQ S K E+
Sbjct: 648 RQRYLDAEEAKRQKVQAEREAAKAATKSEAEKQKPSGKFEE 688
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 389 EKKEDSKTEKSGKPDKPEVK-PKENGNDVRNGTETPSNGGQDANGTVSDTDDEALVIDDD 565
E+ E + + + D+P K K + +G+E +D G V DD V +D
Sbjct: 604 EELERLIQQNNAEQDEPSYKFHKYEYSSEESGSEDEFKSEKDTKGYVISNDDSTQVEEDS 663
Query: 566 E 568
E
Sbjct: 664 E 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,634
Number of Sequences: 5004
Number of extensions: 37124
Number of successful extensions: 202
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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