Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14f10f
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   142   3e-35
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   107   2e-24
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.1  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   4.8  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   4.8  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   8.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   8.5  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  142 bits (345), Expect = 3e-35
 Identities = 71/136 (52%), Positives = 92/136 (67%)
 Frame = +3

Query: 171 WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 350
           W +V MGPPD I GITEAYKKD   KK+NLG G YRDD GKP+VLPSVR+AE  L S+ L
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99

Query: 351 NHEYAPISGEATYTDALAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKA 530
           + EYAPI+G  ++     KLA+G+    IK+R   + Q++SGTGAL +   F+   Y  +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157

Query: 531 KEIWLPTPTWGNHPQI 578
           K I++  PTWGNH  +
Sbjct: 158 KTIYVSDPTWGNHKNV 173


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  107 bits (256), Expect = 2e-24
 Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
 Frame = +3

Query: 177 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSR-GLN 353
           N++    D I  +   Y +D  PKKVN+ VGAYRDD GKP++LP+V+KA +I+  +   N
Sbjct: 8   NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67

Query: 354 HEYAPISGEATYTDALAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK-- 527
           HEY PI+G   +T A A++ F  +  ++      ++Q++SGTGA  L   FI   Y K  
Sbjct: 68  HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127

Query: 528 AKEIWLPTPTWGNH 569
              +++  PTW  H
Sbjct: 128 GAHVYISNPTWPVH 141


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 350 ESSTVKNFFCLSDRRQNKWFSLIVSICSNP 261
           ESST   ++ L+    NKWF +     +NP
Sbjct: 113 ESSTKTVYYVLAHLNDNKWFGVATQKTNNP 142


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 329 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 222
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -1

Query: 329 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 222
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = -1

Query: 230 LVCF----CNA*DYIWR--THLNIVPPGAAGSKACTTNDRVYI 120
           LVCF     N  D  W   + +N  PP  AG  A T +D++YI
Sbjct: 215 LVCFDLNNLNTSDSRWELASVVNDPPPARAGHVAFTFSDKLYI 257


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/67 (20%), Positives = 32/67 (47%)
 Frame = +3

Query: 69  KMAQVLKKLTTQVLKPNNVDTIVGCTGLRASSTWWNNVQMGPPDVILGITEAYKKDTHPK 248
           +++  L      + KP + D     +G ++ S W++   MG  ++ +  T   K +T  +
Sbjct: 325 RLSIFLPSALNNISKPESTDRPNTASGNQSVSAWFSLEPMGQINLTMNFT---KHNTRKR 381

Query: 249 KVNLGVG 269
            ++ G+G
Sbjct: 382 PMDAGLG 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,524
Number of Sequences: 5004
Number of extensions: 52487
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)