Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f10f
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 149 2e-36
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 136 2e-32
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 42 4e-04
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 2.8
05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583 29 3.8
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813... 28 5.0
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 5.0
08_02_0984 + 23294646-23294677,23294805-23294892,23295450-23296226 27 8.7
08_01_0688 - 6072815-6073918 27 8.7
02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783 27 8.7
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589... 27 8.7
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 149 bits (360), Expect = 2e-36
Identities = 74/142 (52%), Positives = 97/142 (68%), Gaps = 1/142 (0%)
Frame = +3
Query: 156 ASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEIL 335
ASS+ + + P D ILG+T AY KD P KVNLGVGAYR +EGKP VL VR+AE++L
Sbjct: 2 ASSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQML 61
Query: 336 -HSRGLNHEYAPISGEATYTDALAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFIT 512
++ EY PI+G A + AKL FG DSP I+ TVQ LSGTG+LR+G EF+
Sbjct: 62 INNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLA 121
Query: 513 KHYAKAKEIWLPTPTWGNHPQI 578
+HY + + I++P PTWGNHP++
Sbjct: 122 RHYHE-RTIYIPQPTWGNHPKV 142
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 136 bits (328), Expect = 2e-32
Identities = 67/156 (42%), Positives = 94/156 (60%)
Frame = +3
Query: 132 IVGCTGLRASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPS 311
++G R+ ++W+ +V+ D ILG+TEA+ D P KVN+GVGAYRDD GKP VL
Sbjct: 20 LMGAVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLEC 79
Query: 312 VRKAEEILHSRGLNHEYAPISGEATYTDALAKLAFGEDSPVIKNRSNCTVQTLSGTGALR 491
VR+AE + + +N EY P+ G + KLA+GE+ IK++ VQ LSGTGA R
Sbjct: 80 VREAERRI-AGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACR 138
Query: 492 LGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLXLP 599
L +F K + +I++PTPTW NH I +P
Sbjct: 139 LFADF-QKRFLPDSQIYIPTPTWANHHNIWRDAQVP 173
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +3
Query: 468 LSGTGALRLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLXLP 599
LSGTGA RL +F + + +I++PTPTW NH I +P
Sbjct: 68 LSGTGACRLFADF-QRRFLPNSQIYIPTPTWSNHHNIWRDAQVP 110
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 153 RASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGV 266
RA ++ + +V+ D ILG+TEA+ D P KVN+GV
Sbjct: 29 RAMASLFGHVEPASKDPILGVTEAFLADPSPDKVNVGV 66
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 258 DLLF*DVCPSCMLL*CLRLHLADPSEHCSTRCC 160
DLL D CPS L CL + + HCS+ C
Sbjct: 743 DLLCCDNCPSTFHLACLGIKMPSGDWHCSSCIC 775
>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
Length = 602
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -2
Query: 292 FPSSSLYAPTPRFTFLGCVSFLYASVMPKITSGGPI*TLFHQVLLALRPVQPTIVSTLLG 113
FPS S A + ++LG + LY ++ K+ G +V L L V P +V+ +
Sbjct: 171 FPSDSRVAVSLATSYLGLSAKLYTTMAEKMPRGATARYSKEKVYLLLNAVVPMLVTLVAA 230
Query: 112 LSTWVV 95
S VV
Sbjct: 231 PSLRVV 236
>06_02_0148 -
12280794-12280962,12281102-12281210,12281283-12281385,
12281587-12281618,12281709-12281926,12282035-12282150,
12282428-12282683,12282912-12282999,12283393-12283468,
12283562-12283620,12285236-12285305,12285399-12285539
Length = 478
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 198 DVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILH 338
D+ + YK+D K LG+ AYR P +LPSV + H
Sbjct: 80 DIAIDSYHRYKEDVGIMK-GLGLNAYRFSVSWPRILPSVEPFVTLFH 125
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 51 VLDSFVKMAQVLKKLTTQVLKPNNVDTIVGCTGLRASSTWWNNV 182
V DSFV + VL++ + + V + G TGL + +T W ++
Sbjct: 579 VADSFVDIVGVLRETWSTLSSLYQVGSASGSTGLASETTIWGSL 622
>08_02_0984 + 23294646-23294677,23294805-23294892,23295450-23296226
Length = 298
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 207 LGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGLNHEY 362
+G T + D H K +N+ Y+DD PF+L + K L L +E+
Sbjct: 142 VGKTRGVRDDGHFKSINIQSFWYKDD---PFILATQSKKIFYLQDTSLGNEW 190
>08_01_0688 - 6072815-6073918
Length = 367
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +3
Query: 159 SSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILH 338
+S WW++ +M + TEA+KK TH + GV A + E + + R E LH
Sbjct: 109 ASEWWDHFRMNRAEGHPKFTEAFKK-TH---IPAGVVALKKREFRA-LKQKDRTVTEYLH 163
Query: 339 SRGLNHEYAP 368
YAP
Sbjct: 164 EFNRLARYAP 173
>02_05_0143 + 26251401-26253734,26254658-26254810,26254951-26256783
Length = 1439
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +3
Query: 405 KLAFGEDSPVIKNRSN-----CTVQTLSGTGALRLGLEFITKHYA 524
KLA G ++N +N C + GTG RL + F+ ++A
Sbjct: 896 KLAGGTSIEQLRNNANTIEGGCVISHAPGTGKTRLAITFVQSYFA 940
>01_01_0762 +
5889925-5890136,5891110-5891273,5891755-5891878,
5891941-5892073,5892629-5892732,5892867-5895780,
5895876-5895965,5896251-5896355,5896633-5896740,
5896826-5896876
Length = 1334
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 315 RKAEEILHSRGLNHEYAPISGEATYTDALAKL-AFGEDSPVIKNRS 449
+KA+++L S GLNH S Y DAL L + E P ++ +S
Sbjct: 410 QKAKQLLVSSGLNHHDEVPSETDNYVDALNTLESETETEPELQTKS 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,963,658
Number of Sequences: 37544
Number of extensions: 358142
Number of successful extensions: 822
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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