Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14f09r
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0222 + 12928470-12928779,12931919-12932052,12932352-129325...    31   0.76 
01_01_0428 + 3250204-3251724                                           29   4.0  
02_04_0400 - 22608519-22608844,22609044-22609122                       29   5.3  

>04_03_0222 +
           12928470-12928779,12931919-12932052,12932352-12932548,
           12932807-12932999,12933078-12933467,12933544-12933623,
           12933757-12933851,12933869-12934077,12934150-12934206,
           12934466-12934549
          Length = 582

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
 Frame = -2

Query: 641 RDGYVSWEDTVDIEACNRGDPDTYHLYSR------DPARTPY-HWDNSTSAGFSTSTNTW 483
           ++G +  +  V +  CN+G  + YH++SR      D + TP    DN  + G     +  
Sbjct: 52  KNGQLHDKRIVQMHLCNKGFTENYHVWSRHGESGADTSETPEGSIDNEMNKGVDDEVDDS 111

Query: 482 LP--VAEDYQE 456
           LP  V+E YQE
Sbjct: 112 LPPVVSEYYQE 122


>01_01_0428 + 3250204-3251724
          Length = 506

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -3

Query: 436 KRLLVVTLRTTKP*PSFVNKLHSLTE 359
           KRL + T RT+K  PS ++KL SLTE
Sbjct: 331 KRLGMSTARTSKELPSLLDKLPSLTE 356


>02_04_0400 - 22608519-22608844,22609044-22609122
          Length = 134

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 699 HQHAASWGSCHVPRRGDRH 643
           H H   WG CH   RGD H
Sbjct: 113 HWHGCRWGCCHRGYRGDCH 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,915,882
Number of Sequences: 37544
Number of extensions: 386120
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)