Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f09r
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z80223-7|CAB02316.2| 613|Caenorhabditis elegans Hypothetical pr... 36 0.041
Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical p... 28 6.3
Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical pr... 28 6.3
AF025457-12|AAY55849.1| 244|Caenorhabditis elegans Hypothetical... 28 6.3
AF022975-10|AAB70668.2| 661|Caenorhabditis elegans Hypothetical... 28 6.3
AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical
protein C38C6.2 protein.
Length = 647
Score = 44.0 bits (99), Expect = 1e-04
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 6/165 (3%)
Frame = -2
Query: 707 LNIINMLLPGVAVTYQGEEIGMRDGYVSWEDTVDIEACNRGDPDTYHLYSRDPARTPYHW 528
L ++ M+LPG Y GEEIGMR+ ++ + V P + W
Sbjct: 456 LMVLQMILPGTNNIYYGEEIGMRN--LANDSRVP------------------PQKGAMQW 495
Query: 527 DNSTSAGFSTSTNTWLPVAEDYQEINLAKQKETARSHFKNYQALTKLR-KQATLSHGEYD 351
D+S + GF+++ + +P D IN +Q +S K + L KLR ++ L G
Sbjct: 496 DDSLNGGFTSAISPPVPSNIDVANINWKRQYAEPQSTLKIFAKLAKLRQREDALMTGTTL 555
Query: 350 IRALSDRTFYLVR-----SLPTHDTYVLLFNVSERRDTVDLGRVP 231
I L D F + R + T + YV N +E + L +P
Sbjct: 556 IGRLVDGAFTITRFNNFENRTTGNIYVAALNFAEHPVKLPLTDLP 600
>Z80223-7|CAB02316.2| 613|Caenorhabditis elegans Hypothetical
protein F26D10.9a protein.
Length = 613
Score = 35.5 bits (78), Expect = 0.041
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 10/183 (5%)
Frame = -2
Query: 749 NRMPTRFRHDMVDGLNIINMLLPGVAVTYQGEEIGMRDGYVSWEDTVDIEACNRGDPDTY 570
+R+ +RF L+ + + LPG Y G+E G++D G+
Sbjct: 398 SRLASRFESATAHLLSFLQLTLPGANSVYYGQEYGLKDA-----------MSKNGEFKQM 446
Query: 569 HLYSRDPARTPYHWDNSTSAGFS-TSTNTWLPVAEDYQEI-NLAKQKETARSHFKNYQAL 396
+ PA +H GFS + P ++D E+ N Q ET S K Y+ L
Sbjct: 447 GVMQWYPAGKDHH-------GFSGNDAPIFFPESDDKLELDNYNTQFETENSALKIYRKL 499
Query: 395 TKLR-KQATLSHGE-------YDIRALSDRTFYLVRSLPTHDTYVLLFNVSERRDTVDLG 240
KLR + L GE + L R V + T T+++ N ++ +D
Sbjct: 500 AKLRQRDEALIVGETVRDELINEDVILFSRYVQAVNNTATGSTFIVALNFGDKEQKIDFS 559
Query: 239 RVP 231
P
Sbjct: 560 IEP 562
>Z32683-16|CAA83631.1| 1061|Caenorhabditis elegans Hypothetical
protein C28A5.6 protein.
Length = 1061
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Frame = -2
Query: 563 YSRDPARTPYHWDNSTSA---GFSTSTNTWLPVAEDYQEINLAKQ-KETARSHFKNYQAL 396
Y A + W +ST A G W +E+ E+ + + R HF+NY+ L
Sbjct: 930 YDSTSATSLSTWTSSTCATDEGEEKRKFKWSLKSEEDSEVEFFEDLDQEEREHFRNYENL 989
Query: 395 TKL--RKQATLSHGEYDIRALSD 333
L + + LS G ++ LSD
Sbjct: 990 VALSVKDEVALSSGS-EVEPLSD 1011
>Z32680-6|CAA83602.1| 1061|Caenorhabditis elegans Hypothetical protein
C28A5.6 protein.
Length = 1061
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Frame = -2
Query: 563 YSRDPARTPYHWDNSTSA---GFSTSTNTWLPVAEDYQEINLAKQ-KETARSHFKNYQAL 396
Y A + W +ST A G W +E+ E+ + + R HF+NY+ L
Sbjct: 930 YDSTSATSLSTWTSSTCATDEGEEKRKFKWSLKSEEDSEVEFFEDLDQEEREHFRNYENL 989
Query: 395 TKL--RKQATLSHGEYDIRALSD 333
L + + LS G ++ LSD
Sbjct: 990 VALSVKDEVALSSGS-EVEPLSD 1011
>AF025457-12|AAY55849.1| 244|Caenorhabditis elegans Hypothetical
protein C08E3.14 protein.
Length = 244
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 136 ASNDNCELVISCPAN 180
AS DNCEL +SCP +
Sbjct: 177 ASEDNCELSVSCPGS 191
>AF022975-10|AAB70668.2| 661|Caenorhabditis elegans Hypothetical
protein K09C6.1 protein.
Length = 661
Score = 28.3 bits (60), Expect = 6.3
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Frame = -2
Query: 563 YSRDPARTPYHWDNSTSA---GFSTSTNTWLPVAEDYQEINLAKQ-KETARSHFKNYQAL 396
Y A + W +ST A G W +E+ E+ + + R HF+NY+ L
Sbjct: 525 YDSTSATSLSTWTSSTCATDEGEEKRKFKWSLKSEEDSEVEFFEDLDQEEREHFRNYENL 584
Query: 395 TKL--RKQATLSHGEYDIRALSD 333
L + + LS G ++ LSD
Sbjct: 585 VALSIKDEVALSSGS-EVEPLSD 606
>AC006637-1|AAK85476.2| 342|Caenorhabditis elegans Hypothetical
protein F41B4.1 protein.
Length = 342
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 572 YHLYSRDPARTPYHWDNST-SAGFSTSTNTWLPVAEDYQEINLAKQKETARSHF 414
YH ++ PA P H +N+ +TST ++ P + Y N Q ++S +
Sbjct: 205 YHRHATPPAPAPQHQNNTNYYTENTTSTTSYHPTSVTYGSSNANSQYGGSQSQY 258
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,226,746
Number of Sequences: 27780
Number of extensions: 332427
Number of successful extensions: 904
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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