Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14f08r
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    26   2.4  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   2.4  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   4.1  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    24   7.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   7.2  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    24   9.5  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    24   9.5  

>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 197 E*RRHSSSFTTCGPRCGSKKNRSV 126
           E R H    T CGP   SKK+ SV
Sbjct: 107 EFRSHVQKITGCGPLSASKKDLSV 130


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 58  TSPSQFQLRRSSHYHNRNILELCTLRFFLDP 150
           +S +   + RSS + N ++   C LRF+ +P
Sbjct: 9   SSSAYSAIARSSSWFNNSLFSSCLLRFYSNP 39


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 VAMRSVLLFSTPNLFILLHNRIIA 359
           VA    L F+TP+L+ L H  ++A
Sbjct: 96  VASADALFFATPHLYKLAHEPLVA 119


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 262 VWSLHCKTELQCGAYCSSAPQIYSFYYTIES 354
           VW+    +E+Q    C+    I  FY T E+
Sbjct: 53  VWARRMASEIQLHKLCNGHKNIIHFYNTAEN 83


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 109 NILELCTLRFFLDPH 153
           N ++ C+L  FLDPH
Sbjct: 408 NSMKQCSLHLFLDPH 422


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
 Frame = +3

Query: 228 VGGEEKLGLSFCVEP----SL*NRVAMRSVLLFSTPNLFILLHNRIIAFTSPILNHR 386
           VG    +  SF V P     L N      V LFSTP+  I   N ++ F +P +  R
Sbjct: 144 VGTRNTISFSFHVTPPALSKLLNDPKQYRVYLFSTPSETIGFGNCLMEFPTPQMELR 200


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 127 YKVPEYFCYDNVSFFEAEIEMAKYRLPQPS 38
           Y +  YF  D   FF   ++ A++ L +P+
Sbjct: 428 YSLKHYFFLDQSDFFTTFLDNAQHELRKPA 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,236
Number of Sequences: 5004
Number of extensions: 32948
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)