Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f08r
(389 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0493 - 25615507-25615524,25615564-25615816,25616127-256162... 29 1.7
09_04_0541 + 18437075-18440062 28 3.0
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973... 27 4.0
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 5.3
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335 27 5.3
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 27 5.3
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 27 7.0
05_01_0174 - 1206240-1206677 26 9.2
>04_04_0493 -
25615507-25615524,25615564-25615816,25616127-25616242,
25616410-25616662,25616736-25616823,25616920-25616994,
25617065-25617140,25617528-25617791
Length = 380
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Frame = +1
Query: 37 PKVVAIGTSPSQFQLRR----SSHYHNRNILELCTLRFFLDPHRGPQV 168
P GTS S +Q RR S+ HN+++ ELC R D R +V
Sbjct: 30 PPDFLFGTSSSAYQARRRNPHSTMLHNKSLSELCFFRLKADIWRVTKV 77
>09_04_0541 + 18437075-18440062
Length = 995
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 262 VWSLHCKTELQCGAYCSSAPQIYSFYYTIES*LLLLQ 372
+W KT L CG +C APQ +ES LLL++
Sbjct: 745 LWGESLKTALLCGTHCFLAPQAKK--AEVESSLLLVK 779
>03_05_0787 +
27696347-27696708,27696851-27696857,27697066-27697371,
27697454-27697873
Length = 364
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -2
Query: 208 VNGLSSAV-IHPASQPVGPGVD 146
V+GL+S V HPASQP P VD
Sbjct: 253 VDGLTSFVPTHPASQPTNPIVD 274
>06_03_0912 +
25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/32 (34%), Positives = 23/32 (71%)
Frame = -2
Query: 379 FKIGEVKAMIRLCNKMNRFGVLKSNTLRIATR 284
FK+ E++AM+RLC K ++ ++ + + ++A R
Sbjct: 279 FKLDELEAMLRLCKKGSKV-IVTTRSKKVADR 309
>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
Length = 377
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 302 RIALQHPKSIHFITQSNHS 358
RI +QHP IHF TQ + S
Sbjct: 335 RIPIQHPNQIHFSTQIHPS 353
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 27.1 bits (57), Expect = 5.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 243 KLGLSFCVEPSL*NRVAMRSVLLFSTPNLFI 335
KLG + +P L N V ++L+F TP+ F+
Sbjct: 73 KLGANVIADPDLENAVKDANMLVFVTPHQFV 103
>06_03_0092 +
16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 254 FVLCGAFTVKPSCNAERIALQHPKSIHFITQSN 352
++LC A P E+ L +PK+ H++ QSN
Sbjct: 799 YLLCAA----PQEEVEKYKLGNPKTFHYLNQSN 827
>05_01_0174 - 1206240-1206677
Length = 145
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -3
Query: 165 LWAPVWIQKKPERTKFQNISVMIM*ASSKLK 73
L +P W+Q+ PE + +S M+ A+++++
Sbjct: 6 LMSPSWLQELPEEQRADAVSSMVYEANARIR 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,458,780
Number of Sequences: 37544
Number of extensions: 200575
Number of successful extensions: 439
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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