Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14f02r
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...   206   4e-54
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    28   1.7  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   5.3  
SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   7.0  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   9.3  

>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score =  206 bits (502), Expect = 4e-54
 Identities = 103/228 (45%), Positives = 143/228 (62%), Gaps = 1/228 (0%)
 Frame = -1

Query: 731 LPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDI-SYPDFSAYRRKETQDPTSKAN 555
           LP +ST  +L GS+    + +   T +       +TD    PDFS Y+ K T D +    
Sbjct: 19  LPVSSTASSLKGSM----MTIPKFTSIRT-----YTDSPEMPDFSEYQTKSTGDRS---- 65

Query: 554 ETIDERQSFTYLIXXXXXXXXXXXXXXXVTHFVSSMSAAADVLALAKIEIKLAEIPEGKS 375
                 +  +Y +               V  F++S SA+ADVLA++K E+ L++IPEGK+
Sbjct: 66  ------RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKN 119

Query: 374 VTFKWRGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVP 195
           +  KW+GKP+FIRHRT +EI    +V + TLRDPQ D  R Q P+WLV+IGVCTHLGCVP
Sbjct: 120 LVVKWQGKPVFIRHRTPEEIQEANSVDISTLRDPQADSDRVQKPEWLVMIGVCTHLGCVP 179

Query: 194 VANAGEFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPHTFMDEGLLV 51
           +  AG++GG++CPCHGSHYD SGRIR+GPAPLNL +P +TF    +++
Sbjct: 180 IGEAGDYGGWFCPCHGSHYDISGRIRRGPAPLNLAIPAYTFEGSKIII 227


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -2

Query: 403 SWLKFQKESLSP--SNGEENHCLSVTGQQTKSRPRRLCLSTRSVTLSTTINAPKTPSGWS 230
           S+ K QKE  S   SN      L +  + T +   R+   TRS    +T   P  PSG S
Sbjct: 528 SFSKSQKEETSSNSSNSSGTRRLGLPQRATPASRERVLPYTRSQAFHSTSLPPSLPSGHS 587

Query: 229 *SAYAPT 209
            S   P+
Sbjct: 588 PSIAIPS 594


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -1

Query: 458 VSSMSAAADVLALAKIEIKLAEIPEGKSVTFKWRGKPLFIRHRTADEISTEKAVPV 291
           VS     ADV +L ++ + L E+P G +   +   + +F +HR  + +  E  +P+
Sbjct: 71  VSLEKREADVASLGEV-MDLEEVPRGITRQARQLNEYIFPKHRFRNHLVDEGKIPL 125


>SPACUNK4.09 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +3

Query: 309 GRD--FVCCPVTDKQWFSSPFEGDRLSFWNFSQLDFNLG*SQNISSR 443
           GRD  ++C   + K W  S  + ++ +   FS+L   LG    I  +
Sbjct: 155 GRDLAWICFRESGKHWMVSALDAEKRAIQRFSELFSGLGLEDRIEGK 201


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 212 HLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGP 108
           H  CV +A+      YYC    S  D S +++  P
Sbjct: 46  HASCVGLADKDIPESYYCEVCHSRSDVSSQVQNSP 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,528
Number of Sequences: 5004
Number of extensions: 62113
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)