Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f02r
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0023 - 19000591-19001234,19003322-19003496 210 9e-55
04_03_0792 + 19693957-19694146,19695614-19696260 210 1e-54
07_03_0865 + 22130880-22130921,22131938-22132170,22132268-221323... 64 2e-10
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 33 0.19
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507... 32 0.45
11_06_0546 + 24853167-24853880 29 4.2
04_03_0775 + 19462030-19462500,19462674-19462883 29 4.2
02_02_0648 - 12619468-12619874,12621432-12621512,12621607-126217... 29 4.2
03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009 29 5.5
02_05_0839 - 32113992-32114210,32114321-32114484,32114612-321147... 28 9.7
>02_04_0023 - 19000591-19001234,19003322-19003496
Length = 272
Score = 210 bits (513), Expect = 9e-55
Identities = 91/165 (55%), Positives = 121/165 (73%)
Frame = -1
Query: 539 RQSFTYLIXXXXXXXXXXXXXXXVTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 360
+++F Y + V FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 108 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 167
Query: 359 RGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAG 180
RGKP+FIR RT ++I+ +V + +LRDPQ D +R +NP+WLVVIGVCTHLGC+P+ NAG
Sbjct: 168 RGKPVFIRRRTEEDINLANSVDIGSLRDPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAG 227
Query: 179 EFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPHTFMDEGLLVVG 45
+FGG++CPCHGSHYD SGRIRKGPAP NLEVP ++F++E L++G
Sbjct: 228 DFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG 272
>04_03_0792 + 19693957-19694146,19695614-19696260
Length = 278
Score = 210 bits (512), Expect = 1e-54
Identities = 92/165 (55%), Positives = 120/165 (72%)
Frame = -1
Query: 539 RQSFTYLIXXXXXXXXXXXXXXXVTHFVSSMSAAADVLALAKIEIKLAEIPEGKSVTFKW 360
+++F Y + V FV SMSA+ DVLALA +E+ L+ I G +VT KW
Sbjct: 114 KRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKW 173
Query: 359 RGKPLFIRHRTADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAG 180
RGKP+FIR RT D+I+ +V V +LR PQ D +R +NP+WLVVIGVCTHLGC+P+ NAG
Sbjct: 174 RGKPVFIRRRTEDDIALANSVDVGSLRHPQQDAERVKNPEWLVVIGVCTHLGCIPLPNAG 233
Query: 179 EFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPHTFMDEGLLVVG 45
+FGG++CPCHGSHYD SGRIRKGPAP NLEVP ++F++E L++G
Sbjct: 234 DFGGWFCPCHGSHYDISGRIRKGPAPFNLEVPTYSFLEENKLLIG 278
>07_03_0865 +
22130880-22130921,22131938-22132170,22132268-22132385,
22132474-22132656,22132859-22132960
Length = 225
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/54 (53%), Positives = 37/54 (68%)
Frame = -1
Query: 221 VCTHLGCVPVANAGEFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPPHTFMDEG 60
VCTHLGCV NA E + CPCHGS Y+ GR+ +GPAPL+L + H +D+G
Sbjct: 153 VCTHLGCVVPWNAAE-NKFICPCHGSQYNNQGRVVRGPAPLSLAL-VHADVDDG 204
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/80 (25%), Positives = 33/80 (41%)
Frame = -1
Query: 326 ADEISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHG 147
+ ++ + VP+D + Q R ++ + V+ C H C + G CP HG
Sbjct: 241 SSDLKDDTMVPIDCFEE-QWVIFRGKDGRPGCVMNTCAHRACPLHLGSVNEGRIQCPYHG 299
Query: 146 SHYDASGRIRKGPAPLNLEV 87
Y G+ K P+ L V
Sbjct: 300 WEYSTDGKCEKMPSTKMLNV 319
>10_08_0971 -
21949721-21949936,21950051-21950484,21950599-21950791,
21950909-21951007,21951114-21951191,21951275-21951669,
21954317-21954482,21954840-21954927,21955015-21955127,
21955242-21955426,21955840-21955987,21956071-21956349,
21956425-21956529,21956892-21957137,21957367-21957408,
21957539-21957613
Length = 953
Score = 32.3 bits (70), Expect = 0.45
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = -1
Query: 320 EISTEKAVPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFGGYYCPCHGSH 141
++ + VP+D + Q R ++ + V C H C + G CP HG
Sbjct: 243 DLKDDTMVPIDCFEE-QWVIFRGKDGRPGCVQNTCAHRACPLHLGSVSEGRIQCPFHGWE 301
Query: 140 YDASGRIRKGPAPLNLEV 87
Y G+ K PA L V
Sbjct: 302 YSTDGKCEKMPATKLLNV 319
>11_06_0546 + 24853167-24853880
Length = 237
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 323 DEISTEKAVPVDTLRDPQHDDQ 258
DEI + P+ TL+ PQH DQ
Sbjct: 169 DEIKAHRKQPILTLKQPQHQDQ 190
>04_03_0775 + 19462030-19462500,19462674-19462883
Length = 226
Score = 29.1 bits (62), Expect = 4.2
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Frame = -1
Query: 335 HRTADEISTEKA--VPVDTLRDPQHDDQRTQNPKWLVVIGVCTHLGCVPVANAGEFG--- 171
HR+ ++ + + VPV L + +H +Q+ NP W + + + A E
Sbjct: 109 HRSKEKETNHRPRNVPVRRLEN-KHYNQQQHNPLWQMSKANGSGFYILHKARCSEIREAH 167
Query: 170 --GYYCPCHGSHYDASGRIRKGPAPLNLEVPP 81
G+ CPC G AP + ++PP
Sbjct: 168 QRGFSCPCKGEEETLEELTTVAAAPASSQIPP 199
>02_02_0648 -
12619468-12619874,12621432-12621512,12621607-12621716,
12621896-12622164,12622440-12622567,12622637-12622699,
12623196-12623493
Length = 451
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 394 KFQKESLSPSNGEENHCLSVTGQQTKS 314
K +KES++ +N +E HC++ G Q S
Sbjct: 18 KLKKESMARANADELHCITFRGDQPGS 44
>03_06_0186 - 32197461-32197751,32204940-32205548,32205603-32207009
Length = 768
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +2
Query: 128 RKHRSGSRGRDSSNPRIHQHWLRARIPSGCIRRSRPTTWGFGCVDRRA 271
R R G RG ++ +PR +Q+W R+R R R +G G ++RA
Sbjct: 359 RGGRRGRRGHNNDHPRANQNW-RSRDRDDDDRDERGRDFGRGRGEQRA 405
>02_05_0839 -
32113992-32114210,32114321-32114484,32114612-32114708,
32115822-32115944,32116770-32117141
Length = 324
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 191 LRARIPSGCIRRSRPTTWGFGCVDRRAEGHGACRQAQPS 307
+ A +P+GC + RP W C A G GA P+
Sbjct: 1 MAAAVPTGCYKCGRPGHWSRDCPSEPA-GAGAASTDNPN 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,300,427
Number of Sequences: 37544
Number of extensions: 460486
Number of successful extensions: 1198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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