Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f02f
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 69 4e-13
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 31 0.13
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.53
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 26 3.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.5
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 6.5
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||... 25 8.6
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 8.6
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 69.3 bits (162), Expect = 4e-13
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 1/136 (0%)
Frame = +3
Query: 207 LPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDI-SYPDFSAYRRKETQDPTSKAN 383
LP +ST +L GS+ + + T + +TD PDFS Y+ K T D +
Sbjct: 19 LPVSSTASSLKGSM----MTIPKFTSIRT-----YTDSPEMPDFSEYQTKSTGDRS---- 65
Query: 384 ETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAADVLALAKIEIKLAEIPEGKS 563
+ +Y + F++S SA+ADVLA++K E+ L++IPEGK+
Sbjct: 66 ------RVISYAMVGTMGALTAAGAQATVHDFLASWSASADVLAMSKAEVDLSKIPEGKN 119
Query: 564 VTFKWRGKPLFIRHRT 611
+ KW+GKP+FIRHRT
Sbjct: 120 LVVKWQGKPVFIRHRT 135
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 31.1 bits (67), Expect = 0.13
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 117 YFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGS 245
YF+S+T A S + ++PT +EK++ LPL ST++T+ S
Sbjct: 699 YFRSNTSGSAKS-EGYYIIPT-TEKSLYLPLRNRSTIDTISHS 739
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.1 bits (62), Expect = 0.53
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 69 YRNKMNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTV 227
+R +S + G +AP ++ +++ PL PS ++LP ++ST+
Sbjct: 399 HRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSSTPILLPRGRSSTL 451
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 3.7
Identities = 23/80 (28%), Positives = 35/80 (43%)
Frame = +3
Query: 177 TPSEKTVVLPLPKTSTVETLHGSLPIQGLKVKAGTRVPAQVRFAHTDISYPDFSAYRRKE 356
TP +++ P+P + SLPI L T +PA A + S D + K+
Sbjct: 314 TPRKRSPSSPVPLLAKKREGSPSLPIPILPKMKDTSIPA-AEPASSTTSARDQTPSTPKD 372
Query: 357 TQDPTSKANETIDERQSFTY 416
P S A + +E+Q TY
Sbjct: 373 VGSP-STAETSAEEKQMETY 391
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 6.5
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = +3
Query: 51 NYLPIIYRNK-MNSVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVL------PL 209
NY ++ RN+ +N+ + G +S ++ P++ T S + PL
Sbjct: 49 NYADLLKRNEDLNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPL 108
Query: 210 PKTSTVETLHGSLPIQG 260
P TST T S+P G
Sbjct: 109 PSTSTSCTTSTSIPPTG 125
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +3
Query: 75 NKMNSVVRAGHLAPYFKSSTQVV-ANSLKPLVVVPTPS--EKTVVLPLPKTSTVETLHGS 245
NK N+++ G AP V+ N+L + + EK P +ST+ T H S
Sbjct: 487 NKENTMLNDGSTAPAKNDIRNVINTNNLDAKLSDESELMIEKNKSYSTPASSTIPTFHTS 546
Query: 246 LPIQGLKV 269
P+ L +
Sbjct: 547 QPLTSLNM 554
>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 199 TTVFSEGVGTTTRGFRLLATTW 134
T +F G+G + +G+ +A TW
Sbjct: 19 TVIFLHGLGDSGQGWSFMANTW 40
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 592 NGFPLHLKVTDFPSG 548
NGFP+ TD+PSG
Sbjct: 48 NGFPVSEDATDYPSG 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,010
Number of Sequences: 5004
Number of extensions: 49228
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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