Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f01r
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 31 1.2
04_04_1110 + 30973202-30973870 31 1.2
12_01_0506 + 4017568-4017716,4018171-4018474 30 1.6
12_01_0204 + 1539859-1540158 30 1.6
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 30 1.6
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.6
03_05_0373 + 23581812-23583293 30 2.2
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 3.8
12_02_0820 + 23437811-23440230,23440336-23440534 28 6.6
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 6.6
05_03_0478 - 14526180-14526578 28 6.6
01_05_0734 + 24735939-24736790 28 6.6
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 28 8.8
01_06_0034 + 25769436-25769701,25769749-25769887 28 8.8
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = -1
Query: 383 PRVSASVVTITGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSD--IG 210
P +S T E +R +R+L + +A + V + S N +S+ IG
Sbjct: 1433 PLISLMTSGSTFVVEPAVRALNRLLDEEYNAEIAATSEVVDLLVSFVPGTNHQLSEACIG 1492
Query: 209 AAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVL 69
A I +G + N ++ + + V + + +PV ++ AE+ R+L
Sbjct: 1493 ALIKLGKDRPNCKLEMVKAGIIEHVLDMILDVPVSVSSSIAELLRIL 1539
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 178 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPVI 357
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P +
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQPFL 156
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 30.3 bits (65), Expect = 1.6
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 75 TADLGCVVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGS 254
T +L V+ + ++ DG ++ ++ E D+E++ D Y + DV + V E GS
Sbjct: 72 TGELDVAYIYVEEPEIVDLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGS 129
Query: 255 GSLSNDVLK-GKSSGS 299
G V + G++SGS
Sbjct: 130 GCKGKAVEEHGEASGS 145
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 530 YAGSWSPPGASDIINFSGRVTDVKADD 450
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 30.3 bits (65), Expect = 1.6
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Frame = -1
Query: 500 SDIINFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVVTITGSAEGEIRIF 321
S++++FS + F S L + G+ V P VSASVV++TG+ + F
Sbjct: 452 SEMMSFSTPLLQKLERCFPSNMLVDLPREGSSRTCVFHFPAVSASVVSLTGAGD----CF 507
Query: 320 SRVLRSFASGGLALENVVAE--ATASVSLADNIIVSDIGAAITIGDVKSNLQIN 165
+ S GGL + VA A A S+ + D +A TI + + I+
Sbjct: 508 VGGVISALCGGLGMMQSVAVGIAIAKSSVESEANIPDKFSAATIAGITPCISIS 561
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = +3
Query: 144 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 296
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>03_05_0373 + 23581812-23583293
Length = 493
Score = 29.9 bits (64), Expect = 2.2
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = -1
Query: 362 VTITGSAEGEIRIFSRVLRSFASGGLA-----LENVVAEATASVSLADNIIVSDIGAAIT 198
V TGSA+G ++++ R ASGG A LE V+ E ++V+ I VS G +
Sbjct: 278 VVFTGSADGTVKVWRREEEPAASGGEAKTRHVLETVLREDESAVTA---IAVSAEGRVVY 334
Query: 197 IG 192
+G
Sbjct: 335 VG 336
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 646 CGTADTQARARAKMKAFIVDWIL 714
C DTQ +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232
>12_02_0820 + 23437811-23440230,23440336-23440534
Length = 872
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 48 DELGDVLQNTADLGC-VVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 224
D+L +Q+ ++ VR + + + ++ WS+ EEI DI + Y S D
Sbjct: 252 DKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEI------DILDEYSSEFTAD 305
Query: 225 NDVVC 239
+DV C
Sbjct: 306 SDVPC 310
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 644 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 549
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>05_03_0478 - 14526180-14526578
Length = 132
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -3
Query: 150 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 46
SW RQ+ ED DG R RGQ RRP RH
Sbjct: 54 SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91
>01_05_0734 + 24735939-24736790
Length = 283
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 310 RTRLKMRISPSAEPVIVTTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRP 480
R L +R S + E +VT D E AR ++ RRK REL+ +A + P
Sbjct: 187 RAGLALRPSNAREDGVVTRD-EVAAVARELITGEKGAAARRKARELREAAAKATRAP 242
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +3
Query: 159 EEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PQDAAENADF 335
EE D E+ D+ + CSSD + + D S NDV SG + +D ++ ++
Sbjct: 419 EEYD-EIFDDLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEY 477
Query: 336 SFSGT 350
S G+
Sbjct: 478 SSGGS 482
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 213 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 323
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,010,675
Number of Sequences: 37544
Number of extensions: 364738
Number of successful extensions: 1283
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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