Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14f01r
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    31   0.64 
U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical p...    31   0.84 
Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    29   3.4  
Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z49937-8|CAD44113.1|  546|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z49867-4|CAD44109.1|  546|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   7.8  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   7.8  

>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 268 protein.
          Length = 881

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 26/116 (22%), Positives = 48/116 (41%)
 Frame = +1

Query: 187  TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPVIVTT 366
            T P V   P+S   +  +       SA    + +    K     +K  +S SA P ++ T
Sbjct: 768  TVPKVTVVPVSRVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITMKPSVSTSARPSLINT 827

Query: 367  DAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*P 534
             +  +   R+ L ++       K + L+ +  T + +   +  S  P GL++PA P
Sbjct: 828  SSHPM--VRSPLPKMSV---LEKPKPLRITRPTVIPQSPTVTSSARPSGLRQPAKP 878


>U21308-15|AAB93316.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK1290.10 protein.
          Length = 412

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = +1

Query: 175 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASPPEAKDLRTRLKMRIS--PSA 345
           RLD T P+  A P+ L ++ ++ +E +  AS T+   A+PP A+     ++   +   S 
Sbjct: 59  RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLP-AAPPSAQVAPPAIRPPEAKRTSL 117

Query: 346 EPVIVTTDAETLGTARTKLSRVPT 417
           EP   +T   ++ +  T L R PT
Sbjct: 118 EPPQPSTPQASISSTTTVLIRNPT 141


>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = -1

Query: 473 VTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVVTITGSAEGEIRIFSRVLRSFAS 294
           V  VK     S+H + VSYV T   +V+ + RV  +++   G     + I   VL     
Sbjct: 358 VKAVKKISIPSIHQKVVSYVST--GMVIGI-RVGVTILACLGLICCILAIVVVVLSLMKQ 414

Query: 293 GGLALE-NVVAEATASVSLADNIIVSDIGAAI-TIGDVKSNLQINLFG 156
            GLA++ +V    +  VS+   II+  I   +  +G V S++ + +FG
Sbjct: 415 DGLAMKLSVAVIISFFVSIVLCIILFKIAMTVFAMGLVVSSVCVPVFG 462


>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 518 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 414
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 518 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 414
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 102 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 245
           Q +RD   EV+D    F  EE+D EV  D    +   +  D D   EG
Sbjct: 28  QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73


>Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 102 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 245
           Q +RD   EV+D    F  EE+D EV  D    +   +  D D   EG
Sbjct: 28  QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73


>Z49937-8|CAD44113.1|  546|Caenorhabditis elegans Hypothetical
           protein C33D3.5 protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 134 NNFLEKIPVYLTDYAAEVSRVLEYVAQLVINRLPVNYSND 15
           NNF++    Y+         +++   QL+INR P+NY  D
Sbjct: 325 NNFIDTAMAYVFTLIGGSKHIVD---QLIINRSPINYGMD 361


>Z49867-4|CAD44109.1|  546|Caenorhabditis elegans Hypothetical
           protein C33D3.5 protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 134 NNFLEKIPVYLTDYAAEVSRVLEYVAQLVINRLPVNYSND 15
           NNF++    Y+         +++   QL+INR P+NY  D
Sbjct: 325 NNFIDTAMAYVFTLIGGSKHIVD---QLIINRSPINYGMD 361


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 677  LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 534
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 677  LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 534
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,573,772
Number of Sequences: 27780
Number of extensions: 284559
Number of successful extensions: 921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)