Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f01f
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1110 + 30973202-30973870 31 0.95
12_01_0204 + 1539859-1540158 30 1.3
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 30 1.3
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 30 1.3
03_05_0373 + 23581812-23583293 30 1.7
01_06_1057 - 34142979-34143114,34143212-34143390,34143496-341436... 29 2.9
12_01_0506 + 4017568-4017716,4018171-4018474 29 3.8
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675... 28 5.1
01_05_0734 + 24735939-24736790 28 5.1
03_02_0114 + 5704002-5704037,5704547-5704666,5705040-5705076,570... 28 6.7
01_06_0034 + 25769436-25769701,25769749-25769887 28 6.7
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 27 8.9
12_01_0149 - 1150949-1151041,1151145-1151190,1151343-1151460,115... 27 8.9
07_03_1482 - 26864793-26865043,26865325-26865454,26865564-268657... 27 8.9
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 27 8.9
01_01_0349 + 2776093-2776566,2778211-2778729,2778813-2779048,277... 27 8.9
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = -1
Query: 554 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPVI 375
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P +
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQPFL 156
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 202 YAGSWSPPGASDIINFSGRVTDVKADD 282
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 30.3 bits (65), Expect = 1.3
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Frame = +1
Query: 232 SDIINFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVVTITGSAEGEIRIF 411
S++++FS + F S L + G+ V P VSASVV++TG+ + F
Sbjct: 452 SEMMSFSTPLLQKLERCFPSNMLVDLPREGSSRTCVFHFPAVSASVVSLTGAGD----CF 507
Query: 412 SRVLRSFASGGLALENVVAE--ATASVSLADNIIVSDIGAAITIGDVKSNLQIN 567
+ S GGL + VA A A S+ + D +A TI + + I+
Sbjct: 508 VGGVISALCGGLGMMQSVAVGIAIAKSSVESEANIPDKFSAATIAGITPCISIS 561
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Frame = -3
Query: 588 SNFASEEIDLEVRFDIANSYCSSDVTDN---DVVCEGDGSGSLSNDVLKGKSSG 436
SN +D E +A C D+ + D++ EGD G L+ D + G
Sbjct: 54 SNSMKMHVDAETAGGVALDVCKGDILEKKQCDIIAEGDRGGVLTVDTCNAEEDG 107
>03_05_0373 + 23581812-23583293
Length = 493
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +1
Query: 370 VTITGSAEGEIRIFSRVLRSFASGGLA-----LENVVAEATASVSLADNIIVSDIGAAIT 534
V TGSA+G ++++ R ASGG A LE V+ E ++V+ I VS G +
Sbjct: 278 VVFTGSADGTVKVWRREEEPAASGGEAKTRHVLETVLREDESAVTA---IAVSAEGRVVY 334
Query: 535 IG 540
+G
Sbjct: 335 VG 336
>01_06_1057 -
34142979-34143114,34143212-34143390,34143496-34143669,
34143757-34144005,34144108-34144233,34144341-34144565,
34144657-34144747,34144837-34144951,34145312-34145366
Length = 449
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 86 CGTADTQARARAKMKAFIVDWIL 18
C DTQ +KM+A + DWI+
Sbjct: 210 CDYIDTQVEINSKMRAILADWII 232
>12_01_0506 + 4017568-4017716,4018171-4018474
Length = 150
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = -3
Query: 606 EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLK-GKSSGS 433
++ DG ++ ++ E D+E++ D Y + DV + V E GSG V + G++SGS
Sbjct: 89 DLCDGSADNSNYEADMELKVDSEEEYVNMDVEVD--VGEATGSGCKGKAVEEHGEASGS 145
>05_04_0307 +
20066169-20066410,20066803-20066858,20067490-20067581,
20068400-20068502,20068623-20068760,20068898-20069148
Length = 293
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 88 RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 183
RDV+ PN + + D+ N +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249
>01_05_0734 + 24735939-24736790
Length = 283
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -1
Query: 422 RTRLKMRISPSAEPVIVTTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRP 252
R L +R S + E +VT D E AR ++ RRK REL+ +A + P
Sbjct: 187 RAGLALRPSNAREDGVVTRD-EVAAVARELITGEKGAAARRKARELREAAAKATRAP 242
>03_02_0114 +
5704002-5704037,5704547-5704666,5705040-5705076,
5705905-5705981,5706642-5706755,5706902-5706969,
5707051-5707129,5707367-5707511,5707627-5707731,
5707917-5707994,5708192-5708247,5708533-5708651,
5708853-5709096,5709203-5709385,5709956-5710264,
5710350-5710399,5711042-5711102,5711184-5711267,
5711461-5711577,5711665-5711831,5711938-5712010,
5712497-5712581,5712693-5712886,5713073-5713228
Length = 918
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 573 EEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSER-PQDAAENADF 397
EE D E+ D+ + CSSD + + D S NDV SG + +D ++ ++
Sbjct: 419 EEYD-EIFDDLEDGSCSSDAYTDSEDGDVDKEYSTDNDVDGSYDSGEDNIEEDMEDDTEY 477
Query: 396 SFSGT 382
S G+
Sbjct: 478 SSGGS 482
>01_06_0034 + 25769436-25769701,25769749-25769887
Length = 134
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 519 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAE 409
+V +D +C+G+G G + G ++ RPQ A E
Sbjct: 16 EVESSDTICQGEGPGEGGHPDPAGPAAALLRPQVAGE 52
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -3
Query: 519 DVTDNDVV---CEGDGSGSLSNDVLKGKSSGSER 427
++ +ND++ C G G+GS S DVL +SG E+
Sbjct: 73 ELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEK 106
>12_01_0149 -
1150949-1151041,1151145-1151190,1151343-1151460,
1151541-1151637,1151711-1151908,1152024-1152086,
1152384-1152443,1152558-1152660,1154398-1154507
Length = 295
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -3
Query: 594 GWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSE 430
GWSN D D+A + S + +D+ E +L D+LK + SE
Sbjct: 66 GWSNLVCSREDHAKSVDVAVLFLGSKLQSSDISKEKQADSTLV-DMLKNSFASSE 119
>07_03_1482 -
26864793-26865043,26865325-26865454,26865564-26865771,
26867529-26867599,26867875-26867884,26869562-26870310
Length = 472
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 361 ASVVTITGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVS 489
A+ + G AEG R VLR + + L+NV AE +S
Sbjct: 160 AATQQLNGGAEGRRRSVEEVLREVGADIIGLQNVRAEEERGMS 202
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 504 DVVCEGDGSGSLSNDVLKGKSSGSERPQDAA 412
+V C G G G+++ D +G SG R DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150
>01_01_0349 +
2776093-2776566,2778211-2778729,2778813-2779048,
2779135-2779410,2779447-2779549,2780058-2780330
Length = 626
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +1
Query: 337 VLAVPRVSASVVTITGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSD 516
+LAV V +++ G+ +G R SRV+ GG+ L EA AD+ S+
Sbjct: 37 LLAVACVVLLLLSSGGAEQGGDR--SRVVSGGGGGGVGLSPHEVEAGVGAVAADDGRCSE 94
Query: 517 IGAA 528
+GAA
Sbjct: 95 VGAA 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,318
Number of Sequences: 37544
Number of extensions: 290535
Number of successful extensions: 1043
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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