Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14f01f
(611 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 31 0.49
U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical p... 31 0.65
Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog... 29 2.6
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr... 28 6.0
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond... 28 6.0
U53338-5|AAA96193.1| 463|Caenorhabditis elegans Hypothetical pr... 27 8.0
U50198-3|AAA91261.2| 503|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 31.5 bits (68), Expect = 0.49
Identities = 26/116 (22%), Positives = 48/116 (41%)
Frame = -1
Query: 545 TSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPVIVTT 366
T P V P+S + + SA + + K +K +S SA P ++ T
Sbjct: 768 TVPKVTVVPVSRVPVAPSTPLSRRMSAPVVRKPTMTAEKKREITMKPSVSTSARPSLINT 827
Query: 365 DAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*P 198
+ + R+ L ++ K + L+ + T + + + S P GL++PA P
Sbjct: 828 SSHPM--VRSPLPKMSV---LEKPKPLRITRPTVIPQSPTVTSSARPSGLRQPAKP 878
>U21308-15|AAB93316.2| 412|Caenorhabditis elegans Hypothetical
protein ZK1290.10 protein.
Length = 412
Score = 31.1 bits (67), Expect = 0.65
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -1
Query: 557 RLDLTSPIVIAAPMSLTMM-LSARETEAVASATTFSRASPPEAKDLRTRLKMRIS--PSA 387
RLD T P+ A P+ L ++ ++ +E + AS T+ A+PP A+ ++ + S
Sbjct: 59 RLDNTIPVPPALPIGLPIIQITTKEPQPPASLTSLP-AAPPSAQVAPPAIRPPEAKRTSL 117
Query: 386 EPVIVTTDAETLGTARTKLSRVPT 315
EP +T ++ + T L R PT
Sbjct: 118 EPPQPSTPQASISSTTTVLIRNPT 141
>Z49911-2|CAA90130.1| 681|Caenorhabditis elegans Hypothetical
protein M28.2 protein.
Length = 681
Score = 29.9 bits (64), Expect = 1.5
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Frame = +1
Query: 259 VTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVVTITGSAEGEIRIFSRVLRSFAS 438
V VK S+H + VSYV T +V+ + RV +++ G + I VL
Sbjct: 358 VKAVKKISIPSIHQKVVSYVST--GMVIGI-RVGVTILACLGLICCILAIVVVVLSLMKQ 414
Query: 439 GGLALE-NVVAEATASVSLADNIIVSDIGAAI-TIGDVKSNLQINLFG 576
GLA++ +V + VS+ II+ I + +G V S++ + +FG
Sbjct: 415 DGLAMKLSVAVIISFFVSIVLCIILFKIAMTVFAMGLVVSSVCVPVFG 462
>Z48334-4|CAB61010.2| 426|Caenorhabditis elegans Hypothetical
protein F10B5.4 protein.
Length = 426
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 214 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 318
W+ S ++NF GRVT +F +H Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386
>AF143297-1|AAD33902.1| 426|Caenorhabditis elegans tubby homolog
protein.
Length = 426
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 214 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 318
W+ S ++NF GRVT +F +H Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386
>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
R13G10.1 protein.
Length = 1469
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 55 LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 198
L C+S + PHR+ E ++ + D V + N+I +L + D RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138
>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
condensation protein protein.
Length = 1469
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 55 LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 198
L C+S + PHR+ E ++ + D V + N+I +L + D RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138
>U53338-5|AAA96193.1| 463|Caenorhabditis elegans Hypothetical
protein C05E11.7 protein.
Length = 463
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/70 (24%), Positives = 30/70 (42%)
Frame = -1
Query: 437 EAKDLRTRLKMRISPSAEPVIVTTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVT 258
EA L L+ + PV+ T ET+ T R K+S + + + R+ + T +
Sbjct: 176 EAASLFQELQTTVFEPTYPVVCTPSNETIATVRPKISNLKEKKIKTQYRKPIQKSKTEIQ 235
Query: 257 RPEKLMMSDA 228
++ S A
Sbjct: 236 EHPMVLTSPA 245
>U50198-3|AAA91261.2| 503|Caenorhabditis elegans Hypothetical
protein R04B3.3 protein.
Length = 503
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 401 ISPSAEPVIVTTDAETLGTARTKLSRVPT 315
ISP A+P +V T +T T+ LS VP+
Sbjct: 305 ISPVAQPAVVQTAPQTPMTSAESLSTVPS 333
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,932,839
Number of Sequences: 27780
Number of extensions: 223646
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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