Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14e24r
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 357 1e-99
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 68 2e-12
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 54 3e-08
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 32 0.078
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma... 30 0.31
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 29 0.96
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 2.9
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 5.1
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 25 8.9
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 8.9
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 357 bits (877), Expect = 1e-99
Identities = 173/217 (79%), Positives = 194/217 (89%)
Frame = -1
Query: 704 FPFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLT 525
F FTQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTKKGSITSVQA+YVPADDLT
Sbjct: 305 FRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKKGSITSVQAVYVPADDLT 364
Query: 524 DPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKIL 345
DPAPATTFAHLDATTVLSR+I+ELGIYPAVDPLDS SR+MDP I+G EHYN+A VQ++L
Sbjct: 365 DPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEHYNLAGSVQQML 424
Query: 344 QDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFTGHAGKLVPLEETI 165
Q+YKSLQDIIAILGMDELSE DKLTV RARK+QRFLSQPF VAEVFTG G+LV L++TI
Sbjct: 425 QEYKSLQDIIAILGMDELSEADKLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTI 484
Query: 164 KGFSKILAGDYDHLPEVAFYMVGPIEEVVAKADTLAK 54
+ F +IL G +D LPE AFYMVG I++ V KA+ +A+
Sbjct: 485 RSFKEILEGKHDSLPESAFYMVGSIDDAVKKAEKIAQ 521
Score = 44.8 bits (101), Expect = 1e-05
Identities = 20/21 (95%), Positives = 20/21 (95%)
Frame = -2
Query: 760 AEYFRDQEGQDVLLFIDNIFR 698
AEYFRD EGQDVLLFIDNIFR
Sbjct: 286 AEYFRDIEGQDVLLFIDNIFR 306
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 67.7 bits (158), Expect = 2e-12
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Frame = -1
Query: 698 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT--KKGSITSVQAIYVPADDLT 525
+ A EVSA +P GY + TD+ T+ ER + GSIT + + +P DD+T
Sbjct: 281 YADALREVSAAREEVPGRRGYPGYMYTDLSTIYERAGRVEGRNGSITQIPILTMPNDDIT 340
Query: 524 DPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGV 357
P P T + + R + IYP ++ L S SR+M I +H +V+ +
Sbjct: 341 HPIPDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQL 400
Query: 356 QKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 231
+ + + +++G + LS+ED+L + K ++ F+SQ
Sbjct: 401 YAMYAIGRDAASMKSVVGEEALSQEDRLALEFLGKFEKTFISQ 443
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 53.6 bits (123), Expect = 3e-08
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Frame = -1
Query: 698 FTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-------TTTKKGSITSVQAIYVP 540
+ +A E+S L +P+ GY L + + ER + ++G+++ V A+ P
Sbjct: 362 WAEALREISGRLAEMPADSGYPAYLGAKLASFYERAGRARCLGSPDREGTVSIVGAVSPP 421
Query: 539 ADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH----YN 372
D +DP + T + L + +A+ +P+++ S S+ ++ E +N
Sbjct: 422 GGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINTSLSYSKYINALQPWYEERVPGFN 481
Query: 371 VARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQR-FLSQ 231
R +++I+Q S+ +II ++G LSE DK+T+ A I+ FL Q
Sbjct: 482 TLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTLDIAGIIKNDFLQQ 530
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 32.3 bits (70), Expect = 0.078
Identities = 29/116 (25%), Positives = 48/116 (41%)
Frame = -1
Query: 575 GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPN 396
GS+T++ I D++ P + D L + GI PA++ S SR+
Sbjct: 347 GSLTALPVIETQGGDVSAYIPTNVISITDGQIFLESELFFKGIRPAINVGLSVSRVGSAA 406
Query: 395 IIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQP 228
+ A VA ++ L Y+ + A G D L + T+ R ++ L QP
Sbjct: 407 QVKAMK-QVAGQIKLFLAQYREVAS-FAQFGSD-LDAGTRATLDRGLRLTELLKQP 459
>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 560 VQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPA--VDPLDSTSRIMDPNIIG 387
+ I VP D P F + SR +A G P+ V+P +S ++I+D I
Sbjct: 91 IAIIGVPFDTAVSHRPGARFGPKGIRSASSRQMAIRGFNPSLNVNPYESWAKILDCGDIP 150
Query: 386 AEHYNVARGVQKILQDYKSL 327
Y+ V+++ + Y L
Sbjct: 151 VSSYDNQLAVRQMTEGYIDL 170
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 0.96
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = -1
Query: 602 QERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATT 480
QE + +G+ T ++A+++P+ + P P+ + A +
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPSRLLREIAAVS 118
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 638 ILQQMGYDQAEQTLLIQPE*TENVVNEEQYILSFLITE 751
+LQ++GY AE+T+L++ + + + +L+ LI E
Sbjct: 1026 VLQELGYIDAERTVLLKGRVACEINSTSELVLTELILE 1063
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 584 TKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGI 447
TK G++ + V + DPA A +L+ +V RA A LG+
Sbjct: 439 TKAGALLGIGVTNVAVRNEADPAMAILSEYLETGSVKLRASAILGL 484
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/54 (18%), Positives = 28/54 (51%)
Frame = +3
Query: 492 QVSKSGSWSRICQVISWYINSLYRCDGTFLGGGNSFLHSTHVSSQSRLISYSRW 653
++S++ S+ ++++ Y+ + D F+G SF+ +T +++ + W
Sbjct: 302 RISRADSYDHDIRMLAKYLQEVTLMDEIFIGAHISFIAATAYYLSMQMLGHLDW 355
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 175 SSGTSLPACPVNTSATWKGCERNL*ILRARATVNLSSSDNSS 300
S G P+ S CE N +R R T ++ SSD S+
Sbjct: 130 SGGIQYSNVPLINSRVTPNCESNCSNIRRRLTAHIISSDAST 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,230,161
Number of Sequences: 5004
Number of extensions: 69578
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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