Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14e24f
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 182 1e-46
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 48 4e-06
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 48 4e-06
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 37 0.012
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 32 0.27
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 32 0.35
U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam ... 29 1.9
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 28 4.3
AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical ... 28 5.7
AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical ... 28 5.7
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical ... 27 10.0
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 182 bits (444), Expect = 1e-46
Identities = 85/108 (78%), Positives = 96/108 (88%)
Frame = +3
Query: 267 DVQFEDNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSP 446
DVQF++NLPPILN LEV RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G P
Sbjct: 81 DVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDP 140
Query: 447 IRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQ 590
I+IPVG ETLGRI+NVIGEPIDERGPI + AAIHAEAPEFV+MSV+
Sbjct: 141 IKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVE 188
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/76 (27%), Positives = 41/76 (53%)
Frame = +3
Query: 348 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 527
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 63 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122
Query: 528 PTDKTAAIHAEAPEFV 575
+ + + +AP +
Sbjct: 123 ANARRSRVEVKAPGII 138
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/76 (27%), Positives = 41/76 (53%)
Frame = +3
Query: 348 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 527
+A +L + V + + + G V +G+ + +PVG LGR+++ +G PID +GPI
Sbjct: 90 MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149
Query: 528 PTDKTAAIHAEAPEFV 575
+ + + +AP +
Sbjct: 150 ANARRSRVEVKAPGII 165
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 36.7 bits (81), Expect = 0.012
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 360 LGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 527
+ +N +GT G+ + + +G +R PV + LGRI N G+PID+ P+
Sbjct: 71 ISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPV 127
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 32.3 bits (70), Expect = 0.27
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 435 SGSPIRIPVGAETLGRIINVIGEPIDERGPI-PTD 536
+G R PV + LGRI N G+PID+ P+ P D
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPED 143
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 399 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 515
T G+ G PVL +G P+ + +G +G I + I P+ +
Sbjct: 59 TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97
>U42830-4|AAC48277.1| 487|Caenorhabditis elegans Neuronal igcam
protein 3 protein.
Length = 487
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 393 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 569
D +G + G+P+ +D G ++ P G E + ++ N GEP+DE A I + E
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDEEIWTIAGNEATIDSLKKE 209
Query: 570 FVDMSV 587
+++V
Sbjct: 210 HAELTV 215
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 492 VIGEPIDERGPIPTDKTAAIHAEAPEFV 575
V+G PID +GPI + + + +AP +
Sbjct: 103 VLGNPIDGKGPIANARRSRVEVKAPGII 130
>AL132898-6|CAC14409.1| 187|Caenorhabditis elegans Hypothetical
protein Y59A8B.9 protein.
Length = 187
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -1
Query: 580 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPS 401
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 9 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 68
Query: 400 VPSMAMVRTVFSP 362
P+ A +T P
Sbjct: 69 TPTAAPPKTCAPP 81
>AL132898-5|CAC14408.1| 316|Caenorhabditis elegans Hypothetical
protein Y59A8B.7 protein.
Length = 316
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = -1
Query: 580 MSTNSGASA*IAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPS 401
+ T G +A +A M RS P+T M P + P S+ PR
Sbjct: 138 LPTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAP 197
Query: 400 VPSMAMVRTVFSP 362
P+ A +T P
Sbjct: 198 TPTAAPPKTCAPP 210
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 508 IGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFS 365
+G P + RP P+ S+TG RT+P+VP+++ R + S
Sbjct: 284 LGIPAPAVPRPVAGKPST----RSASTTGAARTRPAVPAVSAPRALTS 327
>AF003134-6|AAB54146.3| 827|Caenorhabditis elegans Hypothetical
protein ZC581.9 protein.
Length = 827
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 200 PLVNGIDCNDFSTF 159
PLVNG+ C D STF
Sbjct: 594 PLVNGLACKDLSTF 607
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,553,772
Number of Sequences: 27780
Number of extensions: 286875
Number of successful extensions: 699
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -