Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e22f
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   2.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.5  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   3.4  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   3.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   4.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   4.4  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    26   4.4  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    25   5.9  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   7.7  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   7.7  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   7.7  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   7.7  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 275 LCATVAPYHTSACVESHQCSRLFTSFECRRSGNERDGKCFCQEDHH 412
           +C+    +  ++C++S +    F+SF    S NE+D    C    H
Sbjct: 42  ICSEKRGWFPTSCIDSSKIQNFFSSF---HSSNEKDPNAQCCAPFH 84


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 179 SED-DDCSSLAGSVCRSGSCACPHGHQSVLGGSLCATVAP 295
           SED  D S L   VC++G+CA   G  +  GGS   T  P
Sbjct: 51  SEDLKDISPLIQQVCKNGTCA-GDGFCNGTGGSASCTGCP 89


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 192 SSSSEHDHRAKTALN*SEHAKMKRKLFDHILLFG 91
           +S S    R+ +  +  +H+K KR L  +ILL+G
Sbjct: 14  TSRSRESSRSPSVTDLKDHSKAKRTLCRNILLYG 47


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +2

Query: 176 CSEDDDCSSLAGSVCRSGSCACPHGHQSVLGGSLCATVAPYHTSACVESHQCSRLFTSFE 355
           C +   C    GS+C     AC +       G+LC       T+ C +   C+ +  S +
Sbjct: 340 CCDGKTCKLTKGSLCDDQQDACCYQCHFKNAGTLCR----QSTNPCDKPEFCTGI--SSK 393

Query: 356 CRRSGNERDGKCFCQE 403
           C    N  DG+  CQ+
Sbjct: 394 CPVDENWDDGR-ICQD 408


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = -1

Query: 478  ALLVARTSRSVLGYWPATTAEVVVVFLTKTFAVSFIAAS 362
            AL +  +S+ +L  WP   +E++++F  K++ +  +A S
Sbjct: 1497 ALALRTSSKHLLPLWPIVVSELLIIF--KSYCMPNVAIS 1533


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 314 VESHQCSRLFTSFECRRSGNERDGKCFCQEDHHY---FRGRC 430
           +E   CS  +T F    S  E +GK +C   +HY   F  RC
Sbjct: 201 IEHFTCSLCYTVFGPNDSYYEYEGKVYCH--YHYSTLFAARC 240


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +2

Query: 101 KMWS-NNFLFIFACSLQLSAVLALW 172
           K+WS N FL  FAC    +  L LW
Sbjct: 152 KVWSPNQFLLNFACLFSPAHALILW 176


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 258 PYWEEACALPWLRIILQLA*KVISAQDCSRHLSADEAAMNETA 386
           P W +AC L  ++  L +   V  A+   RHL +   A  E A
Sbjct: 154 PPWSDACKLYDIKAYLPVEHSVARARVAHRHLVSGLCATEEEA 196


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 115 QLPFHFRVLASVERGFSSVVVLR 183
           ++P HFRVL   E  F+ V V R
Sbjct: 471 RVPMHFRVLGKYEEEFTIVTVDR 493


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 97  KQNVVEQLPFHFRVLASV 150
           KQ + EQLP  FR+ AS+
Sbjct: 34  KQKLTEQLPTTFRITASI 51


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
 Frame = +2

Query: 161  LALWSCSEDDDCSSLAGSVCRSGSCA-----CPHGHQSVLGGSLCATVAPYHTSACVESH 325
            + L   S+ D C SL  S+CR  +          G+  +L G + A++ P       E  
Sbjct: 1227 MKLLGASDVDTCKSLKRSICRRFAVIPKEHDINSGNAEILCGVIAASLYPNILRYDYEKR 1286

Query: 326  QCSRLFTSFECR 361
            Q S L T+   R
Sbjct: 1287 QWSTLSTNKRVR 1298


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -1

Query: 448 VLGYWPATTAEVVVVFLTKTFAVSFIAAS-SALK*REQS*ALMTFYAS*SMIRSHGSAQA 272
           V+G+   TTA++VVV  ++  A S  +AS +A    E S A     +S +++ S  ++  
Sbjct: 320 VVGFQQGTTAKIVVVDYSEEMASSSSSASATATSSAESSIATSPITSSSNVVSSISTSSM 379

Query: 271 SS 266
            S
Sbjct: 380 DS 381


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,580
Number of Sequences: 5004
Number of extensions: 39649
Number of successful extensions: 105
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)