Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e22f
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0728 + 22606447-22606461,22606651-22606971,22607821-226079...    29   2.6  
05_01_0435 - 3453312-3453527,3455227-3455360,3455544-3455738,345...    28   6.0  
04_04_1002 - 30025914-30026021,30026116-30026297,30026626-300269...    28   6.0  
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174     27   7.9  

>12_02_0728 +
           22606447-22606461,22606651-22606971,22607821-22607941,
           22608041-22608193,22608754-22609424
          Length = 426

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/75 (30%), Positives = 30/75 (40%)
 Frame = +2

Query: 86  GTPKSKMWSNNFLFIFACSLQLSAVLALWSCSEDDDCSSLAGSVCRSGSCACPHGHQSVL 265
           G P + +  +N  F  A S Q S+    WSCS     S L           CP  H S  
Sbjct: 360 GDPFTNICLSNISFSLADSTQSSS----WSCSNISGYSELVFPE------PCPDLHHSSS 409

Query: 266 GGSLCATVAPYHTSA 310
             S+C ++  YH  A
Sbjct: 410 NSSICFSLLTYHALA 424


>05_01_0435 -
           3453312-3453527,3455227-3455360,3455544-3455738,
           3455774-3455929,3456300-3456327,3456374-3456637,
           3456728-3456868,3457482-3457602,3457886-3458049
          Length = 472

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
 Frame = +2

Query: 167 LWSCSED----DDCSSLAGSVCRSGSCACP 244
           LW+CS      DD   LA  +C   +C CP
Sbjct: 195 LWTCSAGNHALDDAFRLAHQICAQKNCKCP 224


>04_04_1002 -
           30025914-30026021,30026116-30026297,30026626-30026908,
           30026992-30027630
          Length = 403

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 173 SCSEDDDC--SSLAGSVCRSGSCACPHGHQSVLGGSLCA 283
           +CS + DC  +S+AGSVC+ G      G     GGS  A
Sbjct: 118 NCSANGDCGVTSVAGSVCKCGKVMEYIGEWPQDGGSTAA 156


>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
          Length = 514

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 470 RGAYKSLRTRLLASNDRGSSGGLLDKNIC 384
           RG Y + R  LL + +   + GLL KN C
Sbjct: 210 RGEYVNERLNLLKAREEAYAAGLLGKNAC 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,079,022
Number of Sequences: 37544
Number of extensions: 305149
Number of successful extensions: 937
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)