Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e21f
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    93   1e-21
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 93.5 bits (222), Expect = 1e-21
 Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
 Frame = +1

Query: 91  GMKCIKYMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPYAFSPAIFVIAIGVIML 270
           GM  IKY+L     +F +     +++G  I+     +S  +      P+I +I +G I+ 
Sbjct: 4   GMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGSIIF 63

Query: 271 FVSLFGCIGALKESTCLVNIFAVILSIVFILEIAAAITAYSLRSEVSQF--LDKKLREAL 444
            +S FGC GA++ES C+   FA  L  + +++IA A+ A+ +      F  + +K +E  
Sbjct: 64  VISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIF 123

Query: 445 PLYYQHAEAQDAFDFIQYELNCCGVDSYMDWH 540
             Y+ ++E++D  DFIQ  L CCGV S  D++
Sbjct: 124 NGYFLNSESKDFIDFIQKNLQCCGVHSLSDYN 155


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 255 WRHNAVRLSLRLHRC 299
           W+ NAVR +L LH+C
Sbjct: 548 WK-NAVRHNLSLHKC 561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,867
Number of Sequences: 438
Number of extensions: 3502
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)