Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14e07r
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 123 3e-29
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 100 2e-22
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 99 8e-22
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 90 3e-19
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 82 7e-17
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 73 6e-14
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 72 7e-14
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 72 1e-13
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 72 1e-13
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 71 1e-13
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 1e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 66 7e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 65 9e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 2e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 64 2e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 64 3e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 63 3e-11
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 62 8e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 59 7e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 58 2e-09
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 2e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 54 3e-08
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 53 5e-08
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 49 6e-07
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 44 2e-05
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 42 7e-05
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 42 7e-05
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 40 3e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 39 6e-04
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.30
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 30 0.40
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.2
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.2
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.1
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 2.8
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 6.4
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 6.4
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 6.4
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 6.4
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 6.4
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 6.4
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 8.5
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 123 bits (296), Expect = 3e-29
Identities = 51/90 (56%), Positives = 75/90 (83%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
+F+ G++ I+VATDVA+RG+DV GI +V N+D+P ++EDY+HRIGRTGR+ +KGT+Y +F
Sbjct: 414 EFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYF 473
Query: 557 TPSNSRQAKDLVSVLQEANQIISPQLQSMA 468
T N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 474 TSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 100 bits (239), Expect = 2e-22
Identities = 45/81 (55%), Positives = 61/81 (75%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 555
FK G+ +LVATDVAARGLD+ ++ VIN +P + EDY+HRIGRTGR+ +KGT+ FFT
Sbjct: 462 FKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFT 521
Query: 554 PSNSRQAKDLVSVLQEANQII 492
P + A +LV+VL++A Q I
Sbjct: 522 PQDKSHAGELVNVLRQAKQDI 542
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 98.7 bits (235), Expect = 8e-22
Identities = 46/89 (51%), Positives = 63/89 (70%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 555
F+ GR SI+VAT VA+RGLD+ + +VIN+D P +DY+HRIGRTGR+ + G + AFF
Sbjct: 476 FRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFN 535
Query: 554 PSNSRQAKDLVSVLQEANQIISPQLQSMA 468
+N AK+L+ +LQEANQ L +MA
Sbjct: 536 RNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 90.2 bits (214), Expect = 3e-19
Identities = 38/91 (41%), Positives = 58/91 (63%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 555
+K G +L+AT V ARGLDV ++ V+N+D PN EDY+HR+GRTGR+ G + F T
Sbjct: 714 YKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFIT 773
Query: 554 PSNSRQAKDLVSVLQEANQIISPQLQSMADR 462
P + A D+ L+ + Q + +LQ++A +
Sbjct: 774 PEQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 82.2 bits (194), Expect = 7e-17
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
+F++G +L+ATD+ ARG+D G+K VINFD+P S YIHRIGRTGR+ + G + FF
Sbjct: 333 KFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFF 392
Query: 557 TPSNSRQAKDLVSVLQEA 504
T + K + V++ +
Sbjct: 393 TKEDGEYIKLIAGVMRSS 410
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 72.5 bits (170), Expect = 6e-14
Identities = 31/70 (44%), Positives = 47/70 (67%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 555
F++G + +L+ TD+ ARG+DV + VIN+D P + E+YIHRIGR+GR KG + F T
Sbjct: 306 FRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVT 365
Query: 554 PSNSRQAKDL 525
+ R +D+
Sbjct: 366 NEDVRILRDI 375
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 72.1 bits (169), Expect = 7e-14
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
+F+ A ILVATDVA+RGLD+ ++ VINFD P +DYIHR+GRT R+ G S +
Sbjct: 303 RFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIV 362
Query: 557 T 555
T
Sbjct: 363 T 363
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 71.7 bits (168), Expect = 1e-13
Identities = 32/71 (45%), Positives = 46/71 (64%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
+F+ G + IL+ TD+ ARG+DV + VIN+D P + E+YIHRIGR GR KG S F
Sbjct: 303 EFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFV 362
Query: 557 TPSNSRQAKDL 525
T + R +++
Sbjct: 363 TNDDVRMMREI 373
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 71.7 bits (168), Expect = 1e-13
Identities = 33/78 (42%), Positives = 47/78 (60%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
Q + A ILVATD+A RG+D+ + V+N++ S EDY HRIGRTGR+ GT+ F
Sbjct: 561 QLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFL 620
Query: 557 TPSNSRQAKDLVSVLQEA 504
P ++ DL +L +
Sbjct: 621 GPEDTDVYYDLRVLLSRS 638
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 71.3 bits (167), Expect = 1e-13
Identities = 34/61 (55%), Positives = 41/61 (67%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
+FK G S LVATDVAARGLD+ + VIN+D P S+ YIHR+GRT R+ G S A
Sbjct: 330 KFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALV 389
Query: 557 T 555
T
Sbjct: 390 T 390
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 68.1 bits (159), Expect = 1e-12
Identities = 31/78 (39%), Positives = 45/78 (57%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 555
FK+ I VATDV RG+D++ + VIN+D P+S + Y+HR+GR GR +KG + F +
Sbjct: 341 FKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSS 400
Query: 554 PSNSRQAKDLVSVLQEAN 501
Q D + E N
Sbjct: 401 SEEDSQILDKIQERFEVN 418
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 65.7 bits (153), Expect = 7e-12
Identities = 33/82 (40%), Positives = 48/82 (58%)
Frame = -2
Query: 731 KEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 552
++ + IL+ TDVAARGLD+ + V+ +D P S++DY+HRIGRT R+ G + F P
Sbjct: 493 EDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLP 552
Query: 551 SNSRQAKDLVSVLQEANQIISP 486
S L S + AN + P
Sbjct: 553 KESEYINLLKSSV-SANILEQP 573
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 65.3 bits (152), Expect = 9e-12
Identities = 26/53 (49%), Positives = 41/53 (77%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKG 576
F++G+ + L+ATDVA+RG+D+ GI+ VIN++ P + E Y+HR+GRT R+ G
Sbjct: 550 FRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSG 602
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.1 bits (149), Expect = 2e-11
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR-SKSKGTSYAF 561
+F IL+ T+VAARGLD+ + +++ +D P+ DYIHR+GRT R +K G S F
Sbjct: 381 EFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMF 440
Query: 560 FTPS 549
PS
Sbjct: 441 LAPS 444
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/90 (33%), Positives = 53/90 (58%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 555
F+ G+ ++LV TDVA+RG+D+ + VIN+D+P + ++HR+GRT R+ G +Y+
Sbjct: 392 FRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRTGWAYSLVR 451
Query: 554 PSNSRQAKDLVSVLQEANQIISPQLQSMAD 465
++ DL L S Q+++ +D
Sbjct: 452 AEDAGYLLDLQLFLNRPLVTSSKQVKTDSD 481
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 63.7 bits (148), Expect = 3e-11
Identities = 28/71 (39%), Positives = 42/71 (59%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
+FK +LV TDVAARG+D+ + +VI++ P++++ Y+HR GRT R+ G S
Sbjct: 434 KFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMC 493
Query: 557 TPSNSRQAKDL 525
P Q K L
Sbjct: 494 GPKELSQLKRL 504
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 63.3 bits (147), Expect = 3e-11
Identities = 25/60 (41%), Positives = 40/60 (66%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFT 555
F+ G LV +D+ RG+D+ + VINFD+P ++E Y+HRIGR+GR +G + +F +
Sbjct: 327 FRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFIS 386
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 62.1 bits (144), Expect = 8e-11
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSY 567
F++ ++ IL ATDV ARG+D I V+ P++++DYIHRIGRTGR+ G +Y
Sbjct: 339 FRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAY 394
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 58.8 bits (136), Expect = 7e-10
Identities = 28/73 (38%), Positives = 36/73 (49%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
+F R +L TD+ ARGLD + +VI D P + YIHR+GRT R G +
Sbjct: 330 KFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLL 389
Query: 557 TPSNSRQAKDLVS 519
PS K L S
Sbjct: 390 LPSEEAFLKRLES 402
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/76 (36%), Positives = 42/76 (55%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
+F G ++LV +D+ ARG+DV + VIN+D P S Y+HRIGRT R+ +G ++
Sbjct: 482 RFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLV 541
Query: 557 TPSNSRQAKDLVSVLQ 510
LV L+
Sbjct: 542 QSHEGHHFSKLVKQLR 557
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 2e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -2
Query: 689 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 546
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 53.6 bits (123), Expect = 3e-08
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Frame = -2
Query: 734 FKEGRASILVATDVAARGLDVDGIKYVINFDYP------NSSEDYIHRIGRTGRSKSKGT 573
F+ G + +LV T+V ARG+DV + V+N+D P + Y+HRIGRTGR G
Sbjct: 398 FRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGV 457
Query: 572 SYAF 561
S F
Sbjct: 458 SINF 461
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 52.8 bits (121), Expect = 5e-08
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = -2
Query: 731 KEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 552
K + ++L TD+A+RGLD+ + +V+ D P + + HR GR GR+ G +
Sbjct: 306 KSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRAGVAIVLLND 365
Query: 551 SNSRQAKDLVSV 516
+ ++L+ V
Sbjct: 366 GREEEYEELLRV 377
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 49.2 bits (112), Expect = 6e-07
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
QF++G + L+AT + GLD+ + +I +D S + R+GRTGR K KG Y
Sbjct: 487 QFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR-KRKGYIYMLL 545
Query: 557 TPSNS----RQAKDLVSVLQEANQIISPQLQSMADR 462
T +AKD LQ+ I+S + S++++
Sbjct: 546 TRGKEEAKWERAKDAYRTLQD--NIVSGRGLSLSEK 579
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS 582
QF+ G + LVAT + GLD+ +I +D +S I R+GRTGR KS
Sbjct: 526 QFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKKS 577
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 725 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 546
G+ I++AT G++ G++ V+++ P SS DY+ GR GR + F+ +
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Query: 545 S 543
S
Sbjct: 1530 S 1530
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = -2
Query: 725 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 546
G+ I++AT G++ G++ V+++ P SS DY+ GR GR + F+ +
Sbjct: 1470 GKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYD 1529
Query: 545 S 543
S
Sbjct: 1530 S 1530
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFF 558
+++ G I+VAT G+D +++VI+ +P S E Y GR GR F+
Sbjct: 788 EWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFY 847
Query: 557 T 555
+
Sbjct: 848 S 848
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -2
Query: 737 QFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSK 579
+FK G+ ++L+AT VA G+DV VI F+ + Y+ GR SK
Sbjct: 418 KFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASK 470
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 638 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 486
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 725 GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGR 591
G+ ++AT+ G+D+ + VI +P S + + GR GR
Sbjct: 609 GKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 725 GRASILVATDVAARGLDVDGIKYVINFDY 639
G ++VAT++A L V GI YV++ Y
Sbjct: 757 GVRKVVVATNIAETSLTVHGISYVVDTGY 785
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 725 GRASILVATDVAARGLDVDGIKYVIN 648
G +++AT++A L +DGI YV++
Sbjct: 777 GGRKVVIATNIAETSLTIDGIYYVVD 802
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 258 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 371
H+IY+ S C + YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -3
Query: 583 QKEHHMLSLPLQIPVKPKIWYLFYKKLIRLLAHNCSRWP 467
+KE ++S+P + +KPK Y+KL++++ + +P
Sbjct: 379 EKEKELISVPSKSDIKPK----HYRKLLKIIEKRINMYP 413
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -2
Query: 713 ILVATDVAARGLDVDGIKYVIN 648
++++T++A L +DGI YV++
Sbjct: 354 VVISTNIAETSLTIDGIVYVVD 375
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 713 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 552
+ VA RGL + I ++ + S Y H GR G G + F P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 671 DGIKYVINFDYPNSS--EDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 537
DG K+V++ DYP+ + ++ H + + SK ++ + SN ++
Sbjct: 97 DGAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKE 143
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -2
Query: 677 DVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS---KGTSYAFFTPSNSRQAKDLVSVLQE 507
++D I+ + F+ N +D I G+ K KG + A PSN+ ++ + +
Sbjct: 203 ELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLLANR 262
Query: 506 ANQIISPQLQSMAD 465
I+SPQ + D
Sbjct: 263 RISIVSPQSGTTRD 276
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 728 EGRASILVATDVAARGLDVDGIKYVIN 648
EG +VAT+VA + + I+YV++
Sbjct: 725 EGHRMCIVATNVAETSITIPNIRYVVD 751
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 621 LHPSY-WENWTFKIKRNIICFLYPFKFP 541
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -2
Query: 680 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 570
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,885
Number of Sequences: 5004
Number of extensions: 56240
Number of successful extensions: 171
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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