Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e03r
         (506 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U71204-1|AAB42214.1|  217|Homo sapiens rin protein.                    29   7.1  
AJ406951-1|CAC27590.1|  154|Homo sapiens keratin associated prot...    29   9.3  

>U71204-1|AAB42214.1|  217|Homo sapiens rin protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -1

Query: 401 PALVDTYEP---IDTEPAYVDIPITDG-GVVTANRE 306
           P + D Y+    ID EPAY+DI  TDG    TA RE
Sbjct: 51  PTIEDAYKTQVRIDNEPAYLDILDTDGQAEFTAMRE 86


>AJ406951-1|CAC27590.1|  154|Homo sapiens keratin associated protein
           9.9 protein.
          Length = 154

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 299 SCCRWTCCSLRCLSS 255
           +CCR TCC   CLSS
Sbjct: 60  TCCRTTCCQPTCLSS 74


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,142,481
Number of Sequences: 237096
Number of extensions: 412701
Number of successful extensions: 1596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)