Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e03r
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   9.7  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 311 REAXSCCRWTCCSLRCLSSXAAHRERQRSR 222
           R     CR+  C    +   A   ERQR++
Sbjct: 159 RNRCQYCRYQKCLAMGMKREAVQEERQRTK 188


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 401 PALVDTYEPIDTE 363
           P+L DT EP+D +
Sbjct: 505 PSLYDTREPVDQQ 517


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 311 REAXSCCRWTCCSLRCLSSXAAHRERQRSR 222
           R     CR+  C    +   A   ERQR++
Sbjct: 159 RNRCQYCRYQKCLAMGMKREAVQEERQRTK 188


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 374 IDTEPAYVDIPITDGGVVT 318
           ID EP  + I I  G VVT
Sbjct: 503 IDGEPVKITIGIHSGEVVT 521


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 374 IDTEPAYVDIPITDGGVVT 318
           ID EP  + I I  G VVT
Sbjct: 503 IDGEPVKITIGIHSGEVVT 521


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,506
Number of Sequences: 438
Number of extensions: 806
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)