Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e02r
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   0.58 
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   3.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   4.1  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    27   4.1  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    26   5.4  
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    26   7.1  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   7.1  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   9.4  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 11/33 (33%), Positives = 24/33 (72%)
 Frame = +1

Query: 376 ALKIFHSKMLYIKKLYKNFPDSFLCIQYSKSMH 474
           ++ IF+  +L+++ L ++ P++ + I YSK+MH
Sbjct: 262 SISIFNLILLHLRALIRSSPENAIKIGYSKTMH 294


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 484 HSQTKVQILSTMHYSIHHQF 543
           H  TKVQ+++   YS HH+F
Sbjct: 569 HLYTKVQLITPEFYSEHHEF 588


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +3

Query: 27   KMCFGFRCKHFQSNISK*LSICMSQSDYATKLIYNSVVVSLLEKNETYRYNYDYSTTIFM 206
            K  F  R   F+ NI K  S      DY + +  N   + L  KN +Y+Y      T  +
Sbjct: 3476 KQLFSRRIGMFE-NIQKLYSPSTILKDYFSSIFTNYSDLWLFRKNFSYQYACFSFITYIL 3534

Query: 207  SINIR 221
            SIN R
Sbjct: 3535 SINNR 3539


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +3

Query: 60  QSNISK*LSICMSQSDYATKLIYNSVVVSLLEKNETYRYNYDYSTTIFMS 209
           Q++++  L IC+ +SD  TK+I + + +   E    +   + Y + +F S
Sbjct: 359 QTDLASVLEICLQRSDPFTKIIIDELSILDKELENKFSPLFQYRSDMFDS 408


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 517  WWTIFAPLFVSDAMNAYFCCI 455
            W+ I +P F+SD + A  C I
Sbjct: 1208 WFEIDSPKFISDTLEAMICAI 1228


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -2

Query: 667 TSERVIIFFTLNEIVQWI-GLTVFEIWINLITLTIFSVLLA-LKIDGVLNSAWWTIFAPL 494
           T +  ++F   N +V+W+  L + E++ ++  L   S L   +++   L   W   +   
Sbjct: 35  TKDTAVVFHETNTLVRWVQTLAIAEVFHSIFGLVSSSPLTTIIQVASRLYLVWGVCYPFS 94

Query: 493 FVSDAMNAYFCCIV 452
           +V +    Y   I+
Sbjct: 95  YVIEGSPIYLSMII 108


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = -2

Query: 727 DIHHPST*EYLGQQCSDLIKTSERVIIFFT-LNEIVQWI-GLTVFEIWINLITLTIFSVL 554
           D++   T E +   C ++ K  + +      LN+ +  + G+ +F + +  ITL IF  L
Sbjct: 558 DLNGDITCEEIELACVEIGKERKSISASLRDLNDSISKLDGICMFIVAV--ITLFIFLYL 615

Query: 553 LALKIDGVLNSAWWTI 506
           +A    GVL SA  T+
Sbjct: 616 IARNFSGVLTSAGTTL 631


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 122 KLCSII*LRHTNRELFTYVTLKMFTPETKTH 30
           K+  II  RHT  ++  YV   +FT  TK H
Sbjct: 305 KVLDIIYKRHTILQIIEYVPYDLFTFITKGH 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,378
Number of Sequences: 5004
Number of extensions: 65427
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)