Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e02r
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965...    47   1e-05
09_02_0362 + 7860088-7860197,7861606-7861636,7861738-7861801,786...    29   3.2  

>09_04_0088 +
           14494711-14494931,14496309-14496399,14496496-14496571,
           14496671-14496755,14497381-14497450,14499111-14499316,
           14499434-14499508,14501043-14501133,14501400-14501441,
           14501661-14501741,14502010-14502089,14502254-14502365
          Length = 409

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
 Frame = -2

Query: 574 LTIFSVLLALKIDGVLNSAWWTIFAPLFVSDAMNAYFCCIVCIRMNLENSYKASLYRASW 395
           L  F+ LLALK+DG+   +WW +F PL++  A+ A     +    + ++   AS +    
Sbjct: 54  LLCFTALLALKLDGLFRGSWWVLFTPLWLFHAVIARCRFSLPAPSSPQSCQMASCH---- 109

Query: 394 SGIFLGLTFVFKFLLCRKLQG--DSAIEYSEVFAPLFIL 284
           S +   L   F+ LLC  L+G  +  I+   VF PL  L
Sbjct: 110 SIVATPLLVAFELLLCVYLEGHDEPFIDLKLVFLPLLAL 148


>09_02_0362 +
           7860088-7860197,7861606-7861636,7861738-7861801,
           7861922-7862052,7863575-7863784,7863891-7863956,
           7864868-7865075,7866270-7866325,7866406-7867128,
           7868246-7868299,7868667-7868695,7869501-7869585,
           7870032-7870202,7870246-7870827
          Length = 839

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 291 NNGAKTSLYSIAESPC-SFLQSKNLKTNVSPKNIPLQDALYKEA 419
           N+GAK S  + AE+   SF Q     + VSPK +P   A+Y  A
Sbjct: 162 NDGAKESCLADAETVAKSFAQCSVSLSVVSPKQLPTLKAIYNAA 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,393,074
Number of Sequences: 37544
Number of extensions: 329942
Number of successful extensions: 719
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)