Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e02r
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical...    64   8e-11
AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical...    54   9e-08
AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical...    33   0.31 
Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical pr...    32   0.54 
AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotei...    32   0.54 
U50308-8|AAG24032.1|  562|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical pr...    28   6.7  
L16559-8|AAA27929.2|  643|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical
           protein T07A9.12a protein.
          Length = 145

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 35/141 (24%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
 Frame = -2

Query: 652 IIFFTLNEIVQWIGLTVFEIWINLITLTIFSVLLALKIDGVLNSAWWTIFAPLFVSDAMN 473
           ++  TL E+  W  +T+FE+W++   + + SV+L LK+   ++ ++  + +PLFV  A +
Sbjct: 1   MVLLTLREMTTWFDITLFELWVHFAAIIVSSVMLCLKLHETVSISYMWVASPLFVGLAFS 60

Query: 472 AYFCCIVCIRMNLE-NSYKASLYRASWSGIFLGLTFVFKFLLCRKLQGD-------SAIE 317
            +F  I+ +R  +E   Y+    R   +   L    +F + +  K+ G+       +   
Sbjct: 61  YFFVFIIYLRSCVEFKDYRGPTVRVILNIFRLTCITLFIYFIVEKISGELEKSEVANRNT 120

Query: 316 YSEVFAPLFILLQLIAVRACQ 254
           Y  VF P+++LL     + C+
Sbjct: 121 YGMVFLPMWLLLASWGFQMCR 141


>AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical
           protein T07A9.12b protein.
          Length = 139

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 8/141 (5%)
 Frame = -2

Query: 652 IIFFTLNEIVQWIGLTVFEIWINLITLTIFSVLLALKIDGVLNSAWWTIFAPLFVSDAMN 473
           ++  TL E+  W  +T+FE+W++      F+ ++ LK+   ++ ++  + +PLFV  A +
Sbjct: 1   MVLLTLREMTTWFDITLFELWVH------FAAIICLKLHETVSISYMWVASPLFVGLAFS 54

Query: 472 AYFCCIVCIRMNLE-NSYKASLYRASWSGIFLGLTFVFKFLLCRKLQGD-------SAIE 317
            +F  I+ +R  +E   Y+    R   +   L    +F + +  K+ G+       +   
Sbjct: 55  YFFVFIIYLRSCVEFKDYRGPTVRVILNIFRLTCITLFIYFIVEKISGELEKSEVANRNT 114

Query: 316 YSEVFAPLFILLQLIAVRACQ 254
           Y  VF P+++LL     + C+
Sbjct: 115 YGMVFLPMWLLLASWGFQMCR 135


>AL117204-39|CAB55145.4|  422|Caenorhabditis elegans Hypothetical
           protein Y116A8C.9 protein.
          Length = 422

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
 Frame = -2

Query: 574 LTIFSVLLALKIDGVLNSAWWTIFAPLFVSDAMNAYFCCI-VCIRMNLENSYKASLYRAS 398
           L IF+ L  LK+DG ++ ++  +FAPL+  + +      + +C   +   S    + R  
Sbjct: 24  LLIFTALFTLKLDGKVSFSYAFVFAPLWACNLLVFVGAIVGICSFCSKPPSRNEIVMRVD 83

Query: 397 WSGIFLGLT---FVFKF--LLCRKLQGDSAIE------YSEVFAPLFILLQLIAVRACQL 251
           +S + +  T   F+  F  L+  KL+ D   E      ++ VF PLF  L ++++     
Sbjct: 84  FSAMLITATEHIFLCTFVSLVFIKLEFDYLFEPGYPLPWTIVFCPLF-SLSILSIGIAIW 142

Query: 250 HQ*HS*PKDALIFMDINI 197
              H  P +   F  INI
Sbjct: 143 SLRHDKPFEFEFFYAINI 160


>Z67882-1|CAA91801.1| 1327|Caenorhabditis elegans Hypothetical
           protein F22E10.3 protein.
          Length = 1327

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -2

Query: 436 LENSYKASLYRASWSGIFLGLTF--VFKFLLCRKLQGDSAIEYSEVFAP--LFILLQLIA 269
           LE   K ++++  WSG F GL F  +F FL C  L G   ++   +  P  +FI++  + 
Sbjct: 317 LEKGRKFAVWKGFWSGFFGGLFFFWLFSFLGCGMLYGAYLLKVGIITTPGDVFIVVMSML 376

Query: 268 VRA 260
           + A
Sbjct: 377 LGA 379


>AY519858-1|AAR89639.1| 1327|Caenorhabditis elegans P-glycoprotein
           related (146.8 kD)(pgp-14) protein.
          Length = 1327

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -2

Query: 436 LENSYKASLYRASWSGIFLGLTF--VFKFLLCRKLQGDSAIEYSEVFAP--LFILLQLIA 269
           LE   K ++++  WSG F GL F  +F FL C  L G   ++   +  P  +FI++  + 
Sbjct: 317 LEKGRKFAVWKGFWSGFFGGLFFFWLFSFLGCGMLYGAYLLKVGIITTPGDVFIVVMSML 376

Query: 268 VRA 260
           + A
Sbjct: 377 LGA 379


>U50308-8|AAG24032.1|  562|Caenorhabditis elegans Hypothetical
           protein F07C3.10 protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
 Frame = +2

Query: 386 YSTPRCXXXXXXXXXXQIHSYAYNTAK---VC---IHRITHKQRCKYC 511
           YS P C           IH  AY   K   +C   I RIT  ++C+YC
Sbjct: 48  YSVPACHGCKSFFRRAIIHKTAYPECKYDKMCFSKISRITRPRKCRYC 95


>Z83106-4|CAB05496.1|  343|Caenorhabditis elegans Hypothetical
           protein F22B8.5 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 481 HHSQTKVQILSTMHYSIHHQF*E-LTVQKI 567
           H  QTK+ +LS  H  +H QF   LT+Q +
Sbjct: 229 HGMQTKLSLLSAQHRRLHRQFFRALTIQVV 258


>L16559-8|AAA27929.2|  643|Caenorhabditis elegans Hypothetical
           protein C06E1.9 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = +3

Query: 69  ISK*LSICMSQSDYATKLIYNSVVVSLLEKNETYRYNYDYSTTIFMS 209
           IS  +S+ +++ +     I+NSVV SL  K++++R++   S T + S
Sbjct: 25  ISHQISLKLARKEGGLMEIFNSVVASLPRKSDSFRFSAISSKTSWES 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,729,051
Number of Sequences: 27780
Number of extensions: 356621
Number of successful extensions: 866
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)