Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e02f
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   5.5  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   9.6  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.6  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +3

Query: 384 DIHHPST*EYLGQQCSDLIKTSERVIIFFT-LNEIVQWI-GLTVFEIWINLITLTIFSVL 557
           D++   T E +   C ++ K  + +      LN+ +  + G+ +F + +  ITL IF  L
Sbjct: 558 DLNGDITCEEIELACVEIGKERKSISASLRDLNDSISKLDGICMFIVAV--ITLFIFLYL 615

Query: 558 LALKIDGVLNSAWWTI 605
           +A    GVL SA  T+
Sbjct: 616 IARNFSGVLTSAGTTL 631


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 637 SSHHSQTKGANIVHHALFNTPSILRAN 557
           ++ HS ++  + VHH  F TP   RAN
Sbjct: 873 NARHSLSRANSPVHHYPFATPPSQRAN 899


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 595 HALFNTPSILRANSTENIVSVIRLIHISNTVSPIHCT 485
           HA  N+ ++ + +S    +SV  L+H  N +SPI  T
Sbjct: 735 HAAPNSKALTK-DSFSTHISVSSLLHSDNEISPIDST 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,557,675
Number of Sequences: 5004
Number of extensions: 51817
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)