Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14e02f
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 38 0.009
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 32 0.35
11_06_0697 + 26371193-26371397,26371562-26374254 32 0.46
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 32 0.46
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 31 1.1
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 30 1.9
01_01_0870 - 6789903-6792251 27 9.9
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 37.5 bits (83), Expect = 0.009
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 537 LTIFSVLLALKIDGVLNSAWWTIFAP 614
L F+ LLALK+DG+ +WW +F P
Sbjct: 54 LLCFTALLALKLDGLFRGSWWVLFTP 79
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 128 DNVLFITKKTNFKAQLDKCCDLLT-RGEKEIILHGLGAAIQRCCNLALQLEILFSGTCQI 304
+N + IT + + + LL +G E++ +G AI + +A ++ G Q
Sbjct: 508 ENEIRITTQGRMRNYITYATTLLQDKGSDEVVFKAMGRAINKTVMIAELIKRRIVGLHQ- 566
Query: 305 EVNTGSVDLVDDLEPLTDEL 364
TGS D+ D EPL + L
Sbjct: 567 NTTTGSTDITDMWEPLEEGL 586
>11_06_0697 + 26371193-26371397,26371562-26374254
Length = 965
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 206 EKEIILHGLGAAIQRCCNLALQLEILFSGTCQIEVNTGSVDLVDDLE 346
E+ + LH L +AI + CNL +L + +S Q+ G ++ ++D+E
Sbjct: 573 ERSVALHSLPSAITQLCNLR-RLGLNYSPIYQVPKGIGKLEFLNDVE 618
>11_01_0428 +
3279662-3279784,3281676-3281756,3281845-3281933,
3282011-3282085,3282211-3282269,3282316-3282414,
3282762-3283013,3283050-3283180
Length = 302
Score = 31.9 bits (69), Expect = 0.46
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 128 DNVLFITKKTNFKAQLDKCCDLLTR-GEKEIILHGLGAAIQRCCNLALQLEILFSGTCQI 304
+N + IT + + + LL G EI++ +G AI + + ++ G QI
Sbjct: 18 ENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKTVMVVELIKRRIGGLHQI 77
Query: 305 EVNTGSVDLVDDLEPLTDEL 364
+T S+D+ D EPL + L
Sbjct: 78 -TSTESIDITDTWEPLEEGL 96
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 30.7 bits (66), Expect = 1.1
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Frame = -1
Query: 652 SKSMHSSHHSQTKGANIVHHAL-FNTPSIL-RANSTENIVSVIRLIHISNTVSP---IH- 491
SKS S S+ KG +++ L P L R NST NI++++R++ N +SP +H
Sbjct: 1180 SKSDPSRSISELKGVSLLDSILQAELPCDLERTNSTYNILALLRVLEGLNQLSPRLRVHA 1239
Query: 490 CTISFSVKKIITLSLVLIRSEHCCPKYSYVD 398
+ F+ KI TL L R+ P +V+
Sbjct: 1240 ASDDFAEGKITTLD-ELYRTGAKVPSEEFVN 1269
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 248 RCCNLALQLEILFSGTCQIEVNTGSVDLVDDLEPL 352
+CCN+ +L F+ C E + + DLEPL
Sbjct: 1290 QCCNILSKLLAAFNSNCSTETDAALGKQLQDLEPL 1324
>01_01_0870 - 6789903-6792251
Length = 782
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 492 WIGLTVFEIWINLITLTIFSVLLALKIDGVLNSAWWTIFA 611
WIG V I + ++L +F L +K DGV S WW+ A
Sbjct: 83 WIGDRVGVIDLPGVSLEVFGDKLYIKEDGV--SLWWSSVA 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,565,310
Number of Sequences: 37544
Number of extensions: 291573
Number of successful extensions: 596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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