Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14e02f
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-17|CAB60596.2|  130|Caenorhabditis elegans Hypothetical...    68   5e-12
AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical...    43   2e-04
AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical...    33   0.24 

>AL132865-17|CAB60596.2|  130|Caenorhabditis elegans Hypothetical
           protein Y62E10A.2 protein.
          Length = 130

 Score = 68.1 bits (159), Expect = 5e-12
 Identities = 29/97 (29%), Positives = 56/97 (57%)
 Frame = +2

Query: 68  RYPNKNYALKKRLPPRPVNGDNVLFITKKTNFKAQLDKCCDLLTRGEKEIILHGLGAAIQ 247
           R+  K   +++R P +P +  N ++IT+KTN ++Q     ++L     E+ +HG+GA+I 
Sbjct: 11  RFDEKTNEMRRRPPVKPSSNPNHIYITRKTNVESQSKSTEEMLNNAFDEVFIHGMGASIN 70

Query: 248 RCCNLALQLEILFSGTCQIEVNTGSVDLVDDLEPLTD 358
           +    A+++E  F G+ + ++ T +V   DD+  L D
Sbjct: 71  KALVFAMEVERRFGGSVKSDIQTSTVQCTDDIVSLLD 107


>AF036706-15|AAK39285.1|  145|Caenorhabditis elegans Hypothetical
           protein T07A9.12a protein.
          Length = 145

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 32/52 (61%)
 Frame = +3

Query: 459 IIFFTLNEIVQWIGLTVFEIWINLITLTIFSVLLALKIDGVLNSAWWTIFAP 614
           ++  TL E+  W  +T+FE+W++   + + SV+L LK+   ++ ++  + +P
Sbjct: 1   MVLLTLREMTTWFDITLFELWVHFAAIIVSSVMLCLKLHETVSISYMWVASP 52


>AF036706-16|AAM97947.1|  139|Caenorhabditis elegans Hypothetical
           protein T07A9.12b protein.
          Length = 139

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 12/52 (23%), Positives = 30/52 (57%)
 Frame = +3

Query: 459 IIFFTLNEIVQWIGLTVFEIWINLITLTIFSVLLALKIDGVLNSAWWTIFAP 614
           ++  TL E+  W  +T+FE+W++      F+ ++ LK+   ++ ++  + +P
Sbjct: 1   MVLLTLREMTTWFDITLFELWVH------FAAIICLKLHETVSISYMWVASP 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,091,543
Number of Sequences: 27780
Number of extensions: 283854
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)