Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV14d21f
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1770 - 29382508-29382591,29382901-29383041,29383134-293835... 31 0.98
08_02_0574 - 18867623-18868033,18869751-18870209 30 1.7
04_04_1654 - 35075409-35075926,35076396-35078694 29 2.3
03_02_0691 + 10432615-10433109,10433155-10433216,10433526-104335... 29 2.3
01_01_1164 + 9263990-9264409,9264498-9264603,9264825-9264877,926... 29 2.3
08_02_0855 - 21913291-21913347,21914117-21914211,21915077-219151... 29 3.0
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 3.0
03_06_0145 - 31973924-31975837 29 4.0
03_05_0553 - 25499260-25499311,25499670-25499899 29 4.0
09_02_0357 + 7788946-7789326,7789620-7789997 28 5.2
08_01_0955 + 9478018-9478773 28 5.2
02_02_0716 - 13264983-13265195,13265219-13265968,13266307-132664... 28 5.2
02_01_0004 + 33108-33752 28 5.2
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759... 28 5.2
04_03_0703 - 18870287-18871351,18871542-18871733 28 6.9
03_01_0020 + 180963-181346,181432-181994,183000-183822 28 6.9
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 28 6.9
10_08_0142 - 15169825-15170538 27 9.2
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230... 27 9.2
06_01_0162 - 1253271-1253639 27 9.2
05_03_0191 - 9521496-9521921 27 9.2
04_04_0040 + 22322839-22324173 27 9.2
03_05_0755 - 27462388-27463140 27 9.2
>07_03_1770 -
29382508-29382591,29382901-29383041,29383134-29383520,
29383685-29383930,29385396-29385437,29385973-29386461
Length = 462
Score = 30.7 bits (66), Expect = 0.98
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +2
Query: 122 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 250
DR E A R GR Q + PE A LP+ P + RLR L
Sbjct: 29 DRKFEPPAAPSRVGRKQRKQKGPEAAARLPNVAPLSKCRLRLL 71
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 29.9 bits (64), Expect = 1.7
Identities = 21/48 (43%), Positives = 27/48 (56%)
Frame = -3
Query: 592 SVTSAGVPPAGLHWYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTA 449
SVT A +P AG ++ SA STST + C+ SS T LPST+
Sbjct: 82 SVTPAAIPCAG-----SSTTASAPTSTSTRAAPACTGRSSSTGLPSTS 124
>04_04_1654 - 35075409-35075926,35076396-35078694
Length = 938
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 541 ASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSS 419
AS R AF + ++ S P FFS T L +L PL+ SS
Sbjct: 109 ASLRHAFLNNNSFRSIPADFFSGLTSLLVISLDQNPLNVSS 149
>03_02_0691 +
10432615-10433109,10433155-10433216,10433526-10433565,
10434562-10434807,10435020-10435189,10435323-10435539,
10435615-10435755,10435943-10436026
Length = 484
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +2
Query: 122 DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQL 250
DR E A R GR Q + PE A LP P + RLR L
Sbjct: 31 DRKFEPPAAPSRVGRKQRKQKGPEAAARLPAVAPLSKCRLRLL 73
>01_01_1164 +
9263990-9264409,9264498-9264603,9264825-9264877,
9265249-9265380,9266250-9266372
Length = 277
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 517 CRTRSAPTPACTSAARPGARPPTSRSGSRA 606
CR R P PA + RP P +R+ +RA
Sbjct: 52 CRRRRVPAPAAAAETRPTRSPSRARARARA 81
>08_02_0855 -
21913291-21913347,21914117-21914211,21915077-21915165,
21915449-21915507,21917872-21918160,21918307-21918398,
21918495-21918621,21918730-21918811,21919265-21919541,
21919647-21919812,21920519-21920847
Length = 553
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 481 FSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQVILMFC 350
FS +P+ LTS +Y+H +S YGL + L + C
Sbjct: 439 FSIDDTMPNPLLTSEKFIPIPIVYYHCSSSYGLSLRLLAQVNLC 482
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +3
Query: 180 YELQNKGLTFQIKGRSNE------DDYGNYTCGLKNQTGHIKAW 293
Y + +GL F+I+ +E D +G +T +K + H+KAW
Sbjct: 608 YVKKIRGLAFEIEDAVDEFTYKLEDKHGGFTAKMKKRIKHVKAW 651
>03_06_0145 - 31973924-31975837
Length = 637
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 526 RSAPTPACTSAARPGARPPTSRSGSRA 606
RS PTPA +A+R PP R SRA
Sbjct: 390 RSPPTPAVVAASRATNPPPPRRRTSRA 416
>03_05_0553 - 25499260-25499311,25499670-25499899
Length = 93
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 553 WYRPASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYF 407
W+ A+A + + ++ R C SC RLP + +PL S +F
Sbjct: 12 WFALAAATAVLAGAAWLIIRACKADESCCRLPPGS-RGLPLLGESLEFF 59
>09_02_0357 + 7788946-7789326,7789620-7789997
Length = 252
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +1
Query: 490 RAWTTPCWCCRTRSAPTPACTSAARPGARPPTSRSGSRACTTRS 621
RA TTP C R+ +AP A TS RP PP + S A RS
Sbjct: 143 RAHTTPP-CSRSVAAPR-ASTSPLRPSPVPPPATLHSAADVQRS 184
>08_01_0955 + 9478018-9478773
Length = 251
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 511 WCCRTRSAPTPACTSAARPGARPPTS 588
W C TR+AP C S R A PP+S
Sbjct: 103 WTC-TRAAPRCRCPSRCRRAAPPPSS 127
>02_02_0716 -
13264983-13265195,13265219-13265968,13266307-13266463,
13266542-13266582
Length = 386
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 407 EVQEGRVGQRHGRERGAGQSRAAGE 481
E Q VG HGR+RG G+ + G+
Sbjct: 269 EAQANVVGNSHGRKRGHGEKKGKGK 293
>02_01_0004 + 33108-33752
Length = 214
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +1
Query: 457 WAVACSWRRTSRAWTTPCWCCRTRSAPTPACTSAARPGARPPTSRSGSRACTT 615
W VA +W A T C PTP + +A G P ++GSR TT
Sbjct: 162 WKVA-AWVTGRHALTVDCIAV-VELQPTPTPSPSAIVGVLQPQDQAGSRCSTT 212
>01_07_0189 +
41875088-41875149,41875322-41875392,41875809-41875902,
41876285-41876360,41877130-41877293,41877428-41877605,
41877687-41877809,41877895-41877990,41878091-41878372
Length = 381
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 95 SRRATGFV*DRMEEEQRASRRGGRPQGAVRAPEQGAHLPDQ 217
+RR G R++ +++GG PQG V E+ HL +Q
Sbjct: 20 ARRICGMA-SRIDANDHGNQQGGNPQGPVGTAERLEHLLNQ 59
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Frame = +1
Query: 496 WTTPCWCCRTRSAPT----PACTSAARPGARPPTSRSGSRACTTRSG 624
W C R SAPT PA +A P TS S +R C + G
Sbjct: 219 WLADCRTRRAPSAPTGDPPPARAAAGPPSTGSSTSMSRARCCGSACG 265
>03_01_0020 + 180963-181346,181432-181994,183000-183822
Length = 589
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 553 SAARPGARPPTSRSGSRACTTRSG 624
S A PG RPP SG C +G
Sbjct: 136 STAAPGLRPPPCSSGGSGCAAANG 159
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 514 CCRTRSAPTPACTSAARPGARPPTSRSGSRACT 612
CC+ P+ +A G R P +R+GSR CT
Sbjct: 112 CCKIL-CPSQLPMDSAVDGPRQPPARAGSRLCT 143
>10_08_0142 - 15169825-15170538
Length = 237
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = +1
Query: 493 AWTTPCWCCRTRSAPTPACTSAARPG--ARPP 582
AW PC C T + TPA G A PP
Sbjct: 9 AWLFPCAVCATTTMTTPAAADDGEGGRAAEPP 40
>09_01_0155 -
2301903-2302151,2302334-2302491,2302651-2302819,
2303796-2304839,2305792-2306075,2306318-2307333,
2307937-2308085
Length = 1022
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 183 ELQNKGLTFQIKGRSNEDDYG 245
E+QN G TF + G S+ED+ G
Sbjct: 194 EMQNDGATFLLDGGSSEDNLG 214
>06_01_0162 - 1253271-1253639
Length = 122
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 398 GDVEVQEGRVGQRHGRERGAGQSRAAGEE 484
GD E +G VG+R G GA AA EE
Sbjct: 49 GDAEGGDGDVGRRSGAATGAAGGDAAEEE 77
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 398 GDVEVQEGRVGQRHGRERGAGQSRAAGEE 484
GD E +G VG+R G GA AA EE
Sbjct: 48 GDAEGGDGDVGRRSGAATGAAGGDAAEEE 76
>04_04_0040 + 22322839-22324173
Length = 444
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 517 STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGL 383
S+ST + PCS +SC+ LP++ TS ++ Y +S G+
Sbjct: 141 SSSTYATVPCSS-ASCSDLPTSKCTSASKCGYTYTYGDSSSTQGV 184
>03_05_0755 - 27462388-27463140
Length = 250
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +1
Query: 508 CWCCRTRSAPTPACTSAARPGARPPTSRS 594
CWCC R A ARP + P + S
Sbjct: 185 CWCCHRRRDQCAAVPQPARPVRQLPAAMS 213
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,998
Number of Sequences: 37544
Number of extensions: 306857
Number of successful extensions: 1571
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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