Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d20r
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    31   0.004
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    31   0.004
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   2.5  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.3  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   4.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   5.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   5.7  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 30.7 bits (66), Expect = 0.004
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -3

Query: 181 CPENAHWT--DDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 20
           CP N  ++  D  C R C +  +    C+      C C  G + N  + CVP S C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 30.7 bits (66), Expect = 0.004
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -3

Query: 181 CPENAHWT--DDPCVRTCDDPYLTNTACVGALIQTCHCNDGLVFNADRKCVPISDC 20
           CP N  ++  D  C R C +  +    C+      C C  G + N  + CVP S C
Sbjct: 37  CPSNEIFSRCDGRCQRFCPN-VVPKPLCIKICAPGCVCRLGYLRNKKKVCVPRSKC 91


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 184 GCPENAHWTDDPCVR 140
           G  +  H+  DPCVR
Sbjct: 708 GALDRLHYETDPCVR 722


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 167 GIFRASIFGSAGLESHHGDNQEHD 238
           G FR SI  +A  +  +G+N E D
Sbjct: 209 GFFRRSITKNAVYQCKYGNNCEID 232


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 167 GIFRASIFGSAGLESHHGDNQEHD 238
           G FR SI  +A  +  +G+N E D
Sbjct: 6   GFFRRSITKNAVYQCKYGNNCEID 29


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 196 CWPREPSRR 222
           CW  EPS+R
Sbjct: 838 CWSGEPSKR 846


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 196 CWPREPSRR 222
           CW  EPS+R
Sbjct: 876 CWSGEPSKR 884


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,016
Number of Sequences: 438
Number of extensions: 1292
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)