Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d19r
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.8  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = +2

Query: 476 TNVYPLRFICNRVVTNVARPLLKSQRVSLSTMRTKTGRSW 595
           T +Y     CN  +  + R + +  ++     RT  GR W
Sbjct: 469 TPIYECNKRCNCDIDCINRVVQRGTKMQFCIFRTANGRGW 508


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/46 (30%), Positives = 18/46 (39%)
 Frame = -2

Query: 783 IQDLIDTYDIDSLKFDAGESSWSPQIPVQNGDIDLHPGHVVESYVR 646
           +  L+    I S+K      SW   I    GD DL   + V  Y R
Sbjct: 418 VPSLVSNVRITSVKSSELSISWDAPITEIGGDSDLVERYEVRCYPR 463


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 282 AAMEASIQKGTPVN-PPIWWLDPTDQ 208
           AA  AS      VN PP W L+PTD+
Sbjct: 663 AAGTASHSTTLTVNVPPRWILEPTDK 688


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 16/64 (25%), Positives = 26/64 (40%)
 Frame = +1

Query: 520 QRRETVVEVPKGVFVNHADEDWEVLGSHARSDLDHWAELGNGSHVRLNHVTRMEINVAVL 699
           QR  T   +P G        +   L   +RS+   W+E      +    +  M IN A +
Sbjct: 540 QRASTEFGIPTGTLYGRCKREGIEL---SRSNPTPWSEDAMTEALEAVRLGHMSINQAAI 596

Query: 700 YWNL 711
           ++NL
Sbjct: 597 HYNL 600


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 116 YTSRDTAPCCSTGAASTRSPNKNSSQT 196
           Y  R    C +TG   ++SP    S T
Sbjct: 581 YKRRPQRACSTTGGVPSKSPTLTHSPT 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,556
Number of Sequences: 438
Number of extensions: 6986
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)