Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d13r
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    27   2.8  
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac...    25   8.6  

>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 121 LNYYFK*VIKKHFITSFISFKTFNRNYTSN*WNYM*YNLISEFKNMQW 264
           +NY F+   + H +T +I     + +YT+N W    ++L  E K++ +
Sbjct: 166 MNYLFENGKEVHEVTVWIEAVLADLDYTANHWTEASFDLWEEIKDVHY 213


>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 535 NANYLRTQYLISTQDKKKQKSIK 603
           NA+Y+  +YL   Q KKK+K  K
Sbjct: 8   NADYIAKKYLRKDQGKKKKKKEK 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,473
Number of Sequences: 5004
Number of extensions: 50070
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)