Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d13r
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   3.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.2  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.2  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 673 VSLMIPSLRLHFIKSRLYYKYL 738
           +SL+IP+L L+FI  R+  ++L
Sbjct: 16  LSLLIPALILYFIYFRISRRHL 37


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 102 NNNYDYIELLL*MSNKKTFYNKFHIIQ 182
           +NNY+Y       ++KK +YN  +I Q
Sbjct: 306 SNNYNYKNYNNNYNSKKLYYNIINIEQ 332


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 102 NNNYDYIELLL*MSNKKTFYNKFHIIQ 182
           +NNY+Y       ++KK +YN  +I Q
Sbjct: 317 SNNYNYKNYNNNYNSKKLYYNIINIEQ 343


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 102 NNNYDYIELLL*MSNKKTFYNKF 170
           N NY  + L     +K +F+N F
Sbjct: 441 NENYKTVNLAAEKKDKNSFFNMF 463


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 218 IICNIT*FLNSKICNGNAQSKK 283
           I+  I   L+++IC+GN  +K+
Sbjct: 2   ILQTIILILSARICHGNPDAKR 23


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 102 NNNYDYIELLL*MSNKKTFYNKF 170
           N NY  + L     +K +F+N F
Sbjct: 441 NENYKTVNLAAEKKDKNSFFNMF 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,129
Number of Sequences: 438
Number of extensions: 3679
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)