Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d12f
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0027 - 195321-195932,197206-197415                               28   5.2  
02_05_0449 - 29107310-29107377,29107732-29107777,29107860-291079...    28   6.8  
01_06_1751 + 39656276-39656279,39656411-39656515,39656680-396568...    28   6.8  
03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371...    27   9.0  
02_04_0153 - 20330775-20330831,20330913-20330999,20333119-203331...    27   9.0  

>08_01_0027 - 195321-195932,197206-197415
          Length = 273

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +2

Query: 374 YARTDAAKSRVWNAHAAWTWFPARS-SPTTEHA 469
           Y R+D+ K  +WN      WFP++S SPTT+ +
Sbjct: 26  YRRSDSFKIGIWN------WFPSQSQSPTTQRS 52


>02_05_0449 -
           29107310-29107377,29107732-29107777,29107860-29107934,
           29108053-29108122,29108313-29108408,29108728-29108914,
           29109001-29109169,29109614-29109646,29109731-29109841,
           29110070-29111256,29112380-29112448,29114417-29114975,
           29115455-29115589,29115714-29115896
          Length = 995

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 501 IRKISNTTPPRFDPSFQ 551
           +RK SN TPPRF PS +
Sbjct: 413 LRKKSNRTPPRFRPSME 429


>01_06_1751 +
           39656276-39656279,39656411-39656515,39656680-39656801,
           39657826-39658869
          Length = 424

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 473 MWHVLWWDLTGRETR 429
           MW +L+WDL GRE +
Sbjct: 45  MWELLFWDLLGREKK 59


>03_01_0490 +
           3711009-3711383,3712104-3712202,3713209-3713461,
           3713908-3714090,3714091-3714227,3714511-3714710,
           3714797-3714994,3715109-3715271
          Length = 535

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 477 RYVACSVVGLDRAGNQVQAAWAFHTRDLAASVL--A*WACLG-SRNFVRDVAF 328
           R+   +      +G+Q+ AAWA       A VL  A WAC+  S   V +VA+
Sbjct: 7   RWRLAAAAAASSSGDQIAAAWAVVRARAVAPVLQFAVWACMAMSVMLVLEVAY 59


>02_04_0153 -
           20330775-20330831,20330913-20330999,20333119-20333157,
           20333596-20333754,20334035-20334104,20334187-20335035,
           20335270-20335562,20335640-20336347
          Length = 753

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 383 TDAAKSRVWNAHAAWTWFPARSSPTTEHAT 472
           T+A K R W A   W  FPA +    +  T
Sbjct: 69  TEAEKERAWTAMEKWFTFPAEAKDRLKRKT 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,637
Number of Sequences: 37544
Number of extensions: 278286
Number of successful extensions: 727
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)