Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d11r
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   9.1  

>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 529 IFNDLELKFNDPISTHNDFCS*LETLKDMTIPKLTKPNQFKSRPPAPWWNDICEKR---- 696
           IF  + L F+ P   H  F    +T  +++IP L KP+ F S       N I + R    
Sbjct: 337 IFAGVSLNFSSPKPAHR-FYELNKTSSNLSIPVLQKPSNFHSSSTELSDNSIHQGRRAVD 395

Query: 697 -VLPLTMP*NFTEM 735
            V+    P NF EM
Sbjct: 396 PVVNQNNPSNFEEM 409


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 623  LNSLNQISLRADLQLPGGMTFVKKEYCLLQCLETLQK*TYYGKLFRL 763
            L+S+ QI+ ++  ++ G ++FVK  +C+ + L    K T      R+
Sbjct: 900  LDSVEQINSKSLRRVTGHVSFVKTGFCMQRILVCAVKSTVLNTTLRI 946


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,079,745
Number of Sequences: 5004
Number of extensions: 60724
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)