Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d11f
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    28   1.2  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    27   1.6  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   4.9  
SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces pom...    26   4.9  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   6.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   8.5  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 263 FNISSIITLISGFINYFIASDTSVRRYPKERSFDMLKITLINYFFN 400
           F IS +I +  G I   +   + +RRYP   S  +L +   +YFF+
Sbjct: 237 FFISLLIGVSIGLITALLLKYSYLRRYPSIESCIILLMAYTSYFFS 282


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 424 FIGLILYYIKEIIYQCYLKHIKTPFFWVPSHR 329
           F  L +  I ++I+ C    +  PFFW P HR
Sbjct: 68  FSVLFIRSIVQMIHPCLA--LSDPFFWAPKHR 97


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 340 PSHRGIAGNEIVDKTAYEGNNAADVKNAMDIPMTSFLLDSGTI 212
           P  R I GN +V +T Y  NN   + N  +I     + D+ TI
Sbjct: 781 PYARVIVGNSVVARTVYTPNNLNPIWN--EILYVPIMADTKTI 821


>SPAC1006.01 |psp3||serine protease Psp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 451

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 290 ISGFINYFIASDTSVRRYPKERSFDMLKITL 382
           ++G   YFI+ D S+  +P E    MLK  L
Sbjct: 400 VAGLAAYFISLDPSLANHPVELKKYMLKFAL 430


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 129 IEVRRCSIMANAQSIYRGDKVSAGFFQYIVPESNRKLVI 245
           +EV R  +   ++ IYR D   +    Y+   +NR+LV+
Sbjct: 190 VEVLRLLLSLFSEEIYRTDGNGSSCCAYVASIANRRLVL 228


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +3

Query: 129 IEVRRCSIMANAQSIYRGDKVSAGFFQYIVPESNRKLVI 245
           IEV R  ++  ++ +YR  +V++    Y+   +N++L++
Sbjct: 270 IEVLRLLLVLISKRLYRSSEVASHTLTYLTCVANKQLIL 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,665
Number of Sequences: 5004
Number of extensions: 47580
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)