Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d11f
         (604 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0041 - 25120961-25121005,25121143-25121194,25121429-251214...    31   0.70 
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423...    30   1.6  
01_06_0483 + 29701674-29702180                                         27   8.7  

>05_06_0041 -
           25120961-25121005,25121143-25121194,25121429-25121496,
           25122167-25122220,25122473-25122541,25122655-25122714,
           25122876-25123048,25123847-25123920,25124472-25124585,
           25124688-25124754,25124840-25124904,25125504-25125583,
           25125689-25125733,25126235-25126300,25126746-25126901,
           25127292-25127516,25127630-25127672,25127997-25128040,
           25128191-25128263,25130335-25130414
          Length = 550

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = +2

Query: 233 ETRHRNVHCIFNISSIITLISGFINYFIASDTSVRRYPKERSFDMLKITLINYFFNI 403
           E R+        ISS+  +I+ + NY  A++  V+RY  ERSF  L        FN+
Sbjct: 3   ERRYTEQEEALEISSLRRIIAAYANYHDAAERDVKRY--ERSFKRLPPAHKELLFNL 57


>08_02_1429 +
           27040293-27040523,27041618-27041739,27042290-27042392,
           27042530-27042620,27042851-27043023,27043379-27043467,
           27044212-27044319,27044408-27044498,27044708-27044797,
           27045587-27045658,27045756-27045849,27045940-27046087,
           27046961-27047222
          Length = 557

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 123 QIIEVRRCSIMANAQSIYRGDKVSAGFFQYIVPESNRKL 239
           QIIE RR      A   Y  DKV + FF+Y+  E+   L
Sbjct: 390 QIIECRRVLKWTYAYGYYLDDKVKSEFFEYLQGEAESGL 428


>01_06_0483 + 29701674-29702180
          Length = 168

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 275 SIITLISGFINYFIASDTSVRRYPKER 355
           S+ T+++GF  +F+ SD  V+  P+ER
Sbjct: 135 SVFTILAGFYMFFVCSD-EVKAAPEER 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,278,965
Number of Sequences: 37544
Number of extensions: 262549
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)