Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d11f
         (604 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       38   0.011
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    32   0.52 
AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p pro...    31   0.91 
AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease...    31   0.91 
AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,...    31   0.91 
AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,...    31   0.91 

>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -1

Query: 361  KTPFFWVPSHRGIAGNEIVDKTAYE 287
            K    WVPSH+GI GNE+ DK A E
Sbjct: 1057 KITLLWVPSHQGIHGNELADKAAQE 1081


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 361  KTPFFWVPSHRGIAGNEIVDKTA 293
            K    W+P H GI GNE+ D+ A
Sbjct: 1042 KIKIMWIPGHSGIKGNELADQAA 1064


>AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p
           protein.
          Length = 333

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 367 HIKTPFFWVPSHRGIAGNEIVDKTAYEGNNAADVKN 260
           +I   + +V +H+GI GNE+ DK A +G+     KN
Sbjct: 297 NITVKWNYVEAHKGIEGNEMADKLARQGSALYKQKN 332


>AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease H1
           protein.
          Length = 333

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 367 HIKTPFFWVPSHRGIAGNEIVDKTAYEGNNAADVKN 260
           +I   + +V +H+GI GNE+ DK A +G+     KN
Sbjct: 297 NITVKWNYVEAHKGIEGNEMADKLARQGSALYKQKN 332


>AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,
           isoform A protein.
          Length = 333

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 367 HIKTPFFWVPSHRGIAGNEIVDKTAYEGNNAADVKN 260
           +I   + +V +H+GI GNE+ DK A +G+     KN
Sbjct: 297 NITVKWNYVEAHKGIEGNEMADKLARQGSALYKQKN 332


>AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,
           isoform B protein.
          Length = 314

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 367 HIKTPFFWVPSHRGIAGNEIVDKTAYEGNNAADVKN 260
           +I   + +V +H+GI GNE+ DK A +G+     KN
Sbjct: 278 NITVKWNYVEAHKGIEGNEMADKLARQGSALYKQKN 313


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,930,930
Number of Sequences: 53049
Number of extensions: 482062
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2462276481
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)