Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d09r
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.27 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.35 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.35 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    26   0.35 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.35 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.35 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.35 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.62 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.62 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.27
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 711 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 601
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 26.6 bits (56), Expect = 0.27
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 483 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 373
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 26.6 bits (56), Expect = 0.27
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 255 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 145
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  IYMPPRSLKTKCKVDSFW 130
           +Y+PP   K+ CK+D  W
Sbjct: 100 LYVPPGIFKSTCKIDIAW 117


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  IYMPPRSLKTKCKVDSFW 130
           +Y+PP   K+ CK+D  W
Sbjct: 100 LYVPPGIFKSTCKIDITW 117


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  IYMPPRSLKTKCKVDSFW 130
           +Y+PP   K+ CK+D  W
Sbjct: 100 LYVPPGIFKSTCKIDITW 117


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  IYMPPRSLKTKCKVDSFW 130
           +Y+PP   K+ CK+D  W
Sbjct: 168 LYVPPGIFKSTCKIDITW 185


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  IYMPPRSLKTKCKVDSFW 130
           +Y+PP   K+ CK+D  W
Sbjct: 168 LYVPPGIFKSTCKIDITW 185


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  IYMPPRSLKTKCKVDSFW 130
           +Y+PP   K+ CK+D  W
Sbjct: 137 LYVPPGIFKSTCKIDITW 154



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 299 TKICMPPRSLKTKCRVDSFW 358
           T + +PP   K+ C++D  W
Sbjct: 135 TCLYVPPGIFKSTCKIDITW 154


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  IYMPPRSLKTKCKVDSFW 130
           +Y+PP   K+ CK+D  W
Sbjct: 100 LYVPPGIFKSTCKMDVAW 117


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 77  IYMPPRSLKTKCKVDSFW 130
           +Y+PP   K+ CK+D  W
Sbjct: 100 LYVPPGIFKSTCKMDIAW 117


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 77  IYMPPRSLKTKCKVDSFW 130
           +Y+PP    + CK+D  W
Sbjct: 100 LYVPPGIFGSTCKIDIAW 117


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 157 IFKLFARKDQSLLIRRNSLFVL 222
           +  +F+R+D   +IRRNS + L
Sbjct: 104 MISVFSRQDIETIIRRNSRYPL 125



 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 385 VFKLFPRKDQSLLIRRNSLFVL 450
           +  +F R+D   +IRRNS + L
Sbjct: 104 MISVFSRQDIETIIRRNSRYPL 125


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 197 SGGIPSLS*ILAFTFSMVSDASTSNV 274
           +GG+PS S  L  + +M  DA  +N+
Sbjct: 592 TGGVPSKSPTLTHSPTMYGDALNANL 617



 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 425 SGGIPSLS*ILAFTFSMVSDASTSNV 502
           +GG+PS S  L  + +M  DA  +N+
Sbjct: 592 TGGVPSKSPTLTHSPTMYGDALNANL 617


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,192
Number of Sequences: 438
Number of extensions: 4871
Number of successful extensions: 27
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)