Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV14d07r
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0273 - 2203828-2204124,2204812-2205072,2205161-2205296,220...    31   0.79 
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199...    29   5.6  

>08_01_0273 -
           2203828-2204124,2204812-2205072,2205161-2205296,
           2205438-2205656,2206130-2206323,2206339-2206505,
           2206862-2207132,2207740-2207784
          Length = 529

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 334 YYLYTNSSQFYSLRVTGYFRISDVIDRVAVSTLNYKREIHSN 209
           Y L+T + +FY LR  GY+   DV  R      N+ R+ ++N
Sbjct: 84  YDLHTTALRFYLLRKHGYYASPDVFQRFRDEEGNFTRDDNNN 125


>12_01_1021 -
           10419383-10419529,10419684-10419733,10419821-10419938,
           10420498-10420540,10420674-10420825,10420876-10420965,
           10422881-10423013,10424397-10424515
          Length = 283

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
 Frame = +2

Query: 164 SWHLRLILRTVKSSVIGMNFSFII--QSRH-SYSIYN 265
           S++ ++ L   + SV+G+NF F++   ++H SY IYN
Sbjct: 27  SFYPQVFLNFKRKSVVGLNFDFLVLNLTKHSSYLIYN 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,878
Number of Sequences: 37544
Number of extensions: 308653
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)